Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00456 ATGGTTCTCCAATGTTTGGGTTTGTGCCGTTCAAAGCATATCGAGTCTGGGTTCCCATCATCTAGTCCAACAGTAATAGAAGAGCTATGCCATCATTTTTCTCTGGCTGATCTTAGGAAATCAACCAACAACTTCGATGATAATCGAATAATTGGAGAGGGAGGCTTTAATACAGTATACAAAGGTTGTCTCCAGCATAATGTTGCCACAGATTGTACAGTCGCGGTGAAGCGAATGAAGGTTAAAAGAGTATGGAGATTGAAAGACTTCAAGAATGAAATTGAGTTGATCTGCCAGCTTCGTCACCCTAATTTGGTCTCTCTCATAGGATTCTGCAACCACAAAGATGAGAATATTATTGTGTACGAATACATGCACAATGGATCTCTCCTTGATCATCTACACAATAGGGAGATGGAACCACTGTCATGGAAGAAAAGGCTAGAGATCTGCATAGGAGCAGCACGTGGGGTGCACTACCTCCACACAGGAGCCAAGCGCACCATCATTCACCGTGACATCAAACCCTCTAACATTCTTTTGGATAGCAATATGGTGCCCAAAATCTCAGATTTCGGGTTTTGCTTGCTGGGACAATTGTTTACATCAAAGCCAAAACCTATTGAAATAGAATCTCGAGCAGGTACAATAGGTTTCTTAGCTCCTGAGAATTTCATCAAAACCTTTATCGGCTTGACAGATAGAAGTGACGTTTATTCCTTTGGCATGGTTCTACTTGAAGTGATATGTGCAAAGTCATATATAAAAGTGTTGATGGACGAGGAGTTTCTAAAAGAAGAACCTGAAACGCCTATTGGTTCTGACGAACCTGAAACGCCTATTGGTTCTACTGATGGGGCTTTGTATTATGACATTAGACCAAGGCTCCGAGCTGGGAAGAGTATTGATCCGGTTCTTGCAGGAAAAATTGCACCAGAGTGTTTGGAATTATACATAGATATCATAGACAGCTGCACTAAGTATGAACCAAATGAACGACCAGCAATGGGCGAAGTAGAGGTGGAACTTGAACATGTTTTGAGTTTGCAACAGGAAGCAGATGCAAGGAACACTGGTGGTGATTATAGCTTATTATCCCCCAGCATTACCAACCTCAACAACAGGAGGCACCAATTTCGGCCTAGAGTTCATTGA 1155 0.4216 MVLQCLGLCRSKHIESGFPSSSPTVIEELCHHFSLADLRKSTNNFDDNRIIGEGGFNTVYKGCLQHNVATDCTVAVKRMKVKRVWRLKDFKNEIELICQLRHPNLVSLIGFCNHKDENIIVYEYMHNGSLLDHLHNREMEPLSWKKRLEICIGAARGVHYLHTGAKRTIIHRDIKPSNILLDSNMVPKISDFGFCLLGQLFTSKPKPIEIESRAGTIGFLAPENFIKTFIGLTDRSDVYSFGMVLLEVICAKSYIKVLMDEEFLKEEPETPIGSDEPETPIGSTDGALYYDIRPRLRAGKSIDPVLAGKIAPECLELYIDIIDSCTKYEPNERPAMGEVEVELEHVLSLQQEADARNTGGDYSLLSPSITNLNNRRHQFRPRVH* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00456 384 FunFam Os07g0541700 protein 125 210 - -
Rops8g00456 384 Gene3D Transferase(Phosphotransferase) domain 1 125 363 - -
Rops8g00456 384 Gene3D Phosphorylase Kinase; domain 1 10 124 - -
Rops8g00456 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Rops8g00456 384 SMART serkin_6 45 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00456 384 SUPERFAMILY Protein kinase-like (PK-like) 19 342 IPR011009 -
Rops8g00456 384 FunFam Receptor-like protein kinase ANXUR2 9 124 - -
Rops8g00456 384 ProSiteProfiles Protein kinase domain profile. 45 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00456 384 PANTHER OS07G0166700 PROTEIN 30 350 IPR045272 GO:0004714|GO:0006468
Rops8g00456 384 Pfam Protein tyrosine and serine/threonine kinase 49 265 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00456 Rops-Chr8 8629245 8630991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00456 33 366 Receptor kinase-like Gene Family AT1G30570 42.515 8.25e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Rops8g00456 PK_Tyr_Ser-Thr 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00456 - - gmx:100812131 372.474