Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00451 ATGGCTCAATCGTTTGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAAGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTTCAGTGGCACTTTACCCACTTACAGTTGTGAAAACTAGGCTGCAAGTTGCTGCAACGGATGCTGTAGGGAGAAATGCGTTTTCTGTTGCAAAAGGATTACTTAAAACAGATGGCATCCCTGGTCTGTATAGAGGGTTTGGCACGGTTATCACTGGAGCAGTTCCGGCAAGAATCATATTCCTCACTGCTCTAGAGACCACAAAGGTGGCTGCTTTCAGAATGCTTGAACCATTTAGACTATCGGAAACTACCCAGGCTGCCATAGCAAATGGAGTTGCAGGCATGACATCCGCGCTTTTTGCTCAGTCTGTGTTTGTACCAATTGATGTGGTTAGTCAAAAGATGATGGTGCAAGGATACTCAGGCCATGCCCAATATAGCGGGGGCCTAGATGTTGCTCGTAAGGTTTTAAGGTCTGATGGCATCCGGGGATTGTATCGAGGGTTTGGTCTCTCCGCACTTACTTATTCACCTTCTAATGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATCTGGAGATTCTTGGACCATGGTGCCAAAAATGATGAAGGCGCTCCTAGTCTTCAGAAGATTATGTTAGTGCAGGCTACAGGAGGGATTATTGCTGGCGCAAGTGCATCCTGCATTACAACCCCATTGGATACTATCAAGACACGCTTACAGGTGATGGGACATGAAAATAGAAGCTCTGTAAAACAAGTTGTTAAAGATTTAATCAGTGAAGATGGTTGGAAAGGCCTATACAGAGGGTTCGGTCCACGAATTTTTAGCATGTCAGCGTGGGGCACTTCAATGATATTGACTTATGAGTATCTGAAACGCATATGCTCAAAAGATGAATAG 945 0.4497 MAQSFGQTEINWDKLDKTKFYVVGAGLFTGVSVALYPLTVVKTRLQVAATDAVGRNAFSVAKGLLKTDGIPGLYRGFGTVITGAVPARIIFLTALETTKVAAFRMLEPFRLSETTQAAIANGVAGMTSALFAQSVFVPIDVVSQKMMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSALTYSPSNAVWWASYGSSQRFIWRFLDHGAKNDEGAPSLQKIMLVQATGGIIAGASASCITTPLDTIKTRLQVMGHENRSSVKQVVKDLISEDGWKGLYRGFGPRIFSMSAWGTSMILTYEYLKRICSKDE* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00451 314 FunFam Mitochondrial substrate carrier family protein 21 313 - -
Rops8g00451 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Rops8g00451 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 313 - -
Rops8g00451 314 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Rops8g00451 314 Pfam Mitochondrial carrier protein 228 313 IPR018108 -
Rops8g00451 314 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Rops8g00451 314 PRINTS Mitochondrial carrier protein signature 74 92 IPR002067 GO:0055085
Rops8g00451 314 PRINTS Mitochondrial carrier protein signature 125 147 IPR002067 GO:0055085
Rops8g00451 314 PRINTS Mitochondrial carrier protein signature 30 48 IPR002067 GO:0055085
Rops8g00451 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Rops8g00451 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Rops8g00451 314 Gene3D Mitochondrial carrier domain 21 314 IPR023395 -
Rops8g00451 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00451 Rops-Chr8 8533209 8538633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00451 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 74.267 2.67e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00451 K15121 - gmx:100782750 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00451 8 8533209 8538633 Rops8g00451 8 8533209 8538633 ECH
Rops5g01515 5 31418155 31425756 Rops8g00451 8 8533209 8538633 PCT