Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00449 ATGGGCTTCTCTTTGTTTTCAACTGCAAGTCCTTGCGTTTTGTTCTTGCTTCTACTGTCTTGTACTTGCTTCACTTCAACAGATGCTTATGATCCACTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGTTATGTTGCTGTTGTAACAATGAACAACTTCCAACAATATCGTCATATTGCTGCACCTGGCTGGACACTAGGATGGACATGGGCAAAAAAGGAGGTAATATGGACCATGATGGGAGCGCAGACCACCGAACAAGGAGATTGTTCAAAATTTAAGGGAAATGTTCCACATTGCTGTAAAAAGGATCCAACAGTTGTAGATTTACTTCCTGGAACACCTTACAATCAGCAAATTGCAAATTGCTGCAAAGGTGGGGTGCTCAGTTCATGGGCACAGGATCCAACCAATGCAGTAGCATCATTTCAAGTCAGTGTAGGTAGAGCTGGAACCACAAACAGAACTGTCAAAGTCCCTAAAAACTTCACCTTAAAGGCACCAGGACCAGGTTATACTTGTGGGCCAGCAAAAATTGTGAGACCAACTCAATTCATTCAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACCTGGAATGTGACATGCACCTATTCACAATTTCTAGCTCAGAAAACTCCCACTTGCTGTGTCTCCCTCTCATCTTTCTATAACGATACCATTGTACCATGCCCAACATGTGCATGTGGCTGCCAGAGTAACTCATCTCAGTCAGGGAGCTGTGTAGATCGAGATACGCCACATTTGGCATCAGTTGTTTCGGGCTCCGGAAAGAATGATTTTTCACCTTTGGTTCAATGTACTAGTCATATGTGCCCAATCCGAGTCCACTGGCATGTTAAGGTTAACTACAAGGAGTACTGGCGTGTGAAGGTTACTATTTCTAATTTTAATTACAGAATGAATTATTCTGAGTGGAACCTGGTTGTTCAACATCCAAACTTGGACAATCTGACTCAGCTGTTCAGTTTCAACTACAAGTCATTAACTCCTTATGGTTCAATAAATGATACAGCAATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTCAATCATGCCGGCCCTAATGGTAATGTTCAATCAGAGCTACTCTTCCGAAAGGATAAATCAACTTTTACTTTTGAGAAGGGTTGGGCTTTTCCTCGGAGGATCTACTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAATGCTGGTTCTAGGCATGAGATTTCCTTGTTTGCCCTAGTGATGGCCTCTTTGGTAGCCTTTGTATTTTATGCATACGCTTAA 1347 0.4232 MGFSLFSTASPCVLFLLLLSCTCFTSTDAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIAAPGWTLGWTWAKKEVIWTMMGAQTTEQGDCSKFKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVRPTQFIQPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQSNSSQSGSCVDRDTPHLASVVSGSGKNDFSPLVQCTSHMCPIRVHWHVKVNYKEYWRVKVTISNFNYRMNYSEWNLVVQHPNLDNLTQLFSFNYKSLTPYGSINDTAMLWGVKFYNDFLNHAGPNGNVQSELLFRKDKSTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSRHEISLFALVMASLVAFVFYAYA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00449 448 PANTHER PROTEIN COBRA 18 438 IPR006918 GO:0010215|GO:0016020
Rops8g00449 448 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
Rops8g00449 448 PIRSF COBRA 3 448 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00449 Rops-Chr8 8509280 8512932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00449 1 443 COBRA Gene Family AT3G02210 74.610 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00449 - - gmx:100783820 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00449 8 8509280 8512932 Rops8g00449 8 8509280 8512932 ECH
Rops5g01519 5 31450537 31453008 Rops8g00449 8 8509280 8512932 PCT
Rops8g00449 8 8509280 8512932 Rops5g01517 5 31446595 31450432 PCT