Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00443 ATGGTAGCTATGATGGGTTCTCTAGCAGCAGAGAAAGGATGGAAGAAAGGCCCTTGGACTCATGAAGAGGACGCGTTGCTCAGTGAATATGTCAACTTGCATGGGGAGGGTACATGGAGTTCTGTGGCCAAGTGTACAGGCTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTAAATTATTTGAGGCCAGGCCTGAAGAAAGGTCAATTAACACCTATAGAAGAAGGAATCATTATGGAACTGCATGCCCTTCTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACTGATAACGAGATAAAGAACTACTGGAGAACCCACTTCAAGAAGAGAGAGAAACCCAAACAAAAGATGCTAGAAAGGGGAAGAAGAGCAAAGGTGATAAAACAGTTGAGACAAGACCAACAAGAACAACAACCTCAAAGCATGTCTTCTCATGAGGAGACCAAAAATGAAACAAAATCCTATGAGTCACAAGATAACGAGCAACAACAAGAGATGGGTTGTATGTACCCAACAATAGAACACCAATATAGCCTTCCTTTAATGCATCAAGAATTCTCATCTACATGGCCAGAGACTATAGAAGATGATAGCCTATGGTTTAGTTTATGGAACTTTGATGAAACACAAGGTTTTGCCGATAATATAAACCAGTTTGGCAAAAATAATGTCATGCCAAATAATCAAGCTACTTTTGGAGCTGAAGGGGAGTGCATGCAAAACCAAGATAAAATTTCTTTTGAGGATGCTTACGATAACATCTGCTACGGAAAATACATGTTTACCTGA 810 0.4062 MVAMMGSLAAEKGWKKGPWTHEEDALLSEYVNLHGEGTWSSVAKCTGLNRSGKSCRLRWVNYLRPGLKKGQLTPIEEGIIMELHALLGNKWSTIAKYLPGRTDNEIKNYWRTHFKKREKPKQKMLERGRRAKVIKQLRQDQQEQQPQSMSSHEETKNETKSYESQDNEQQQEMGCMYPTIEHQYSLPLMHQEFSSTWPETIEDDSLWFSLWNFDETQGFADNINQFGKNNVMPNNQATFGAEGECMQNQDKISFEDAYDNICYGKYMFT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00443 269 MobiDBLite consensus disorder prediction 138 152 - -
Rops8g00443 269 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Rops8g00443 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Rops8g00443 269 MobiDBLite consensus disorder prediction 134 170 - -
Rops8g00443 269 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Rops8g00443 269 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Rops8g00443 269 CDD SANT 73 114 IPR001005 -
Rops8g00443 269 Coils Coil 152 172 - -
Rops8g00443 269 Gene3D - 72 117 - -
Rops8g00443 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Rops8g00443 269 CDD SANT 18 63 IPR001005 -
Rops8g00443 269 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Rops8g00443 269 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 215 - -
Rops8g00443 269 SMART sant 68 116 IPR001005 -
Rops8g00443 269 SMART sant 15 65 IPR001005 -
Rops8g00443 269 FunFam Myb transcription factor 16 68 - -
Rops8g00443 269 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Rops8g00443 269 Gene3D - 15 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00443 Rops-Chr8 8373290 8374720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00443 13 227 MYB Transcription Factor Family AT3G30210 53.846 8.07e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g00443 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00443 K09422 - gmx:100816944 349.362