Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00428 ATGAATAAGCCAGTAAGAATCCTGGTAAAGCATGATGAATTGACCCTTGAAGATATCAAGCAGTTTTATGTGAATGTTGATAAGGAAGAGTGGAAACTAGAGACACTACGCGACCTTTATGAGACTCTGGCTATCACTCAGAATGTCATTTTCGTGAATACAAGGCGCAAGGTGGACTGGCTCACTGTCAAGATGAGAAGCAATGACCATACAGTCTCAACCACCCATGGAGACATGGACCGAAACACTCGTGATATCATCATGCGTGAATTTCGCTCTGGCTCTTCAAGAGTTCTAATCACCACTGACCTCTTGGCTCATGGTATTGATGTGCAGCAAGTATCTCAAACCCACAAGTGA 360 0.4361 MNKPVRILVKHDELTLEDIKQFYVNVDKEEWKLETLRDLYETLAITQNVIFVNTRRKVDWLTVKMRSNDHTVSTTHGDMDRNTRDIIMREFRSGSSRVLITTDLLAHGIDVQQVSQTHK* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00428 119 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 115 - -
Rops8g00428 119 CDD SF2_C_DEAD 19 115 - -
Rops8g00428 119 Gene3D - 11 117 IPR027417 -
Rops8g00428 119 Pfam Helicase conserved C-terminal domain 32 115 IPR001650 -
Rops8g00428 119 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 18 119 IPR001650 -
Rops8g00428 119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 115 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00428 Rops-Chr8 7980897 7981256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00428 1 115 Eukaryotic Initiation Factors Gene Family AT1G72730 92.174 2.53e-71 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00428 K03257 - gmx:100809918 211.46