Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00412 ATGTGTATGCATCAATATTCCGTGAGGGAAGTGCATTCACTTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCTACAGCATCACCTGATAATTCTCTATCTGACATCTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTATTTCCGCTCCCAGCATGATGGGCTAGTTTCGAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAGCCTCTAAGAGGTGATGTCGATGTGGACCCAGAATCTTTAAATTCGGGTGATAAATGGAATGATTGTGCTGGCAAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCAGTCAGACTTTCATCTGCAAAGCTTACAACTGGAACAGGGCTTGTCTATGCATCACCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 567 0.4427 MCMHQYSVREVHSLPSSIQGAASMTSTASPDNSLSDIYRSPPRPLPYDADPRYFRSQHDGLVSRREKGSSHLNEESEPLRGDVDVDPESLNSGDKWNDCAGKDGSKEYRSKSSVRLSSAKLTTGTGLVYASPEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00412 188 MobiDBLite consensus disorder prediction 52 91 - -
Rops8g00412 188 FunFam E3 ubiquitin-protein ligase At3g02290-like 115 185 - -
Rops8g00412 188 SUPERFAMILY RING/U-box 133 185 - -
Rops8g00412 188 MobiDBLite consensus disorder prediction 12 36 - -
Rops8g00412 188 CDD RING-H2_AIRP1-like 134 182 - -
Rops8g00412 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 185 IPR013083 -
Rops8g00412 188 Pfam RING-H2 zinc finger domain 135 178 IPR024766 GO:0008270
Rops8g00412 188 ProSiteProfiles Zinc finger RING-type profile. 138 178 IPR001841 -
Rops8g00412 188 SMART ring_2 138 178 IPR001841 -
Rops8g00412 188 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 21 186 - -
Rops8g00412 188 MobiDBLite consensus disorder prediction 12 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00412 Rops-Chr8 7577626 7582084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00412 10 187 C3H Transcription Factor Family AT5G15790 59.563 9.01e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00412 - - gmx:100788192 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00412 8 7577626 7582084 Rops8g00412 8 7577626 7582084 ECH