Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g00412 | ATGTGTATGCATCAATATTCCGTGAGGGAAGTGCATTCACTTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCTACAGCATCACCTGATAATTCTCTATCTGACATCTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTATTTCCGCTCCCAGCATGATGGGCTAGTTTCGAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAGCCTCTAAGAGGTGATGTCGATGTGGACCCAGAATCTTTAAATTCGGGTGATAAATGGAATGATTGTGCTGGCAAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCAGTCAGACTTTCATCTGCAAAGCTTACAACTGGAACAGGGCTTGTCTATGCATCACCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA | 567 | 0.4427 | MCMHQYSVREVHSLPSSIQGAASMTSTASPDNSLSDIYRSPPRPLPYDADPRYFRSQHDGLVSRREKGSSHLNEESEPLRGDVDVDPESLNSGDKWNDCAGKDGSKEYRSKSSVRLSSAKLTTGTGLVYASPEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT* | 189 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g00412 | 188 | MobiDBLite | consensus disorder prediction | 52 | 91 | - | - | |
Rops8g00412 | 188 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 115 | 185 | - | - | |
Rops8g00412 | 188 | SUPERFAMILY | RING/U-box | 133 | 185 | - | - | |
Rops8g00412 | 188 | MobiDBLite | consensus disorder prediction | 12 | 36 | - | - | |
Rops8g00412 | 188 | CDD | RING-H2_AIRP1-like | 134 | 182 | - | - | |
Rops8g00412 | 188 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 185 | IPR013083 | - | |
Rops8g00412 | 188 | Pfam | RING-H2 zinc finger domain | 135 | 178 | IPR024766 | GO:0008270 | |
Rops8g00412 | 188 | ProSiteProfiles | Zinc finger RING-type profile. | 138 | 178 | IPR001841 | - | |
Rops8g00412 | 188 | SMART | ring_2 | 138 | 178 | IPR001841 | - | |
Rops8g00412 | 188 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 21 | 186 | - | - | |
Rops8g00412 | 188 | MobiDBLite | consensus disorder prediction | 12 | 113 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g00412 | Rops-Chr8 | 7577626 | 7582084 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g00412 | 10 | 187 | C3H Transcription Factor Family | AT5G15790 | 59.563 | 9.01e-73 | 218 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g00412 | - | - | gmx:100788192 | 334.339 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops8g00412 | 8 | 7577626 | 7582084 | Rops8g00412 | 8 | 7577626 | 7582084 | ECH |