Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00380 ATGGACACCGTACATGGGGACACCGTATATTATACGGCAAATGTGTGGCATTTTAAAATTCTGATTTCAACTAAACCACTTGTGTCTCTTGAAAATCATAGCCAGAAGGTACAAGATGAAGAAGCACAAAGACTTGAGGACAAAAATGATAAGGTTAGACTTGAGGACAATTATGATCCCATGACTGGATGGATGCATGGAGCTCAAATGGTCACATTTAATATGCAGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAAGAAAGGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATCAATGAGTCTCCCGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGTACAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGGGATAATTTGGAAGATATGATCACAGTCATTGATCTTTCTAGGAAGACATTTTCTCGTATACGATTGAATTATGTATTCGCGATGGCCTAA 522 0.4042 MDTVHGDTVYYTANVWHFKILISTKPLVSLENHSQKVQDEEAQRLEDKNDKVRLEDNYDPMTGWMHGAQMVTFNMQVGIQDVRAEVMPARKADVVRSFQKDGSIVAMVGDGINESPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDMITVIDLSRKTFSRIRLNYVFAMA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00380 173 NCBIfam HAD-IC family P-type ATPase 84 172 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g00380 173 PRINTS P-type cation-transporting ATPase superfamily signature 131 143 - -
Rops8g00380 173 PRINTS P-type cation-transporting ATPase superfamily signature 108 127 - -
Rops8g00380 173 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 57 76 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops8g00380 173 Coils Coil 30 57 - -
Rops8g00380 173 SUPERFAMILY PLC-like phosphodiesterases 56 76 IPR017946 GO:0006629|GO:0008081
Rops8g00380 173 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 74 173 - -
Rops8g00380 173 Pfam haloacid dehalogenase-like hydrolase 77 122 - -
Rops8g00380 173 SUPERFAMILY HAD-like 76 172 IPR036412 -
Rops8g00380 173 Gene3D - 61 173 IPR023214 -
Rops8g00380 173 PRINTS H+-transporting ATPase (proton pump) signature 139 164 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g00380 173 PRINTS H+-transporting ATPase (proton pump) signature 80 96 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g00380 173 PRINTS H+-transporting ATPase (proton pump) signature 108 124 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00380 Rops-Chr8 7118848 7120806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00380 76 173 Primary Pumps ATPases AT5G44790 85.714 9.29e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00380 K17686 - gmx:100778219 177.178