Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00340 ATGTTAGTGCAGCAATGTCAAACAGAAGTTGATGTTACTCCTTTTGATGGTGGTAGTTCTACTTCTCATTCTGCTTCTGTGTCTGTCAAGCGGAAATTAGAGAATAGCTATGTGGTGAATGGTGATGATCCCAATGATATATTTCCCAAGGATCTTCAGAAAGATATGGAGGATGTTTGTGATGTTGACCAGTACCTTTCGTTGGACAAATTGGAGTGTTCAATTGATGATAATAAGAATAATGTTAGAGTTCCTAGCTTGAGTCAAGGCACAAGAGGACGGTTTAGTGGTTCATCTGTGTTAGATGGTGAAAGTTCCAGATTTACATCCTATGATATTGATTTCTCATCTTATCGTGCAAGTCATTTGTTTGATGAGGGTGATGATGCGATTGATCTCATGTTAAATGTTGAACAAGAATCCTTGATAGAACATGTTTTGTTCCTACCTAGCGAGGATGAAGTGTGTCTTGATTTAGGTGATAATGTTTTTAGTTGTGCGAATTGTGGTGCCATGACTTGGTATGAAGAACGTTCTGATAAGTCTAACCAGAATAGCAATCCTCAATTCTCAATTTGTTGTATGAAAGGAAAGATAATTCTTCCTTATTTGAGTAGGCCACCTGAGTTGATATGGAATTTGGTCAATGGATTTGATGCTCGGAGTGTACACTTTATTGAGAACATTCGGTCCTATAATAGTATGTTTGCTTTTACTTCGATCGGTGGCAAGATAGAAACGAGTTTTAATAATGGTGGTGGTCCTCCTCAATTTATTCTTAGTGGCCAGAATTTTCACAGGATTGGTTCATTGTTACCTGTTGAAGGTGAAAAGCCGAAGTTTTCGCAGATGTATATTTATGATACAAGCAATGAGGTCTCAAATAGGACGACTATCTTTAGGTTGTCCACACTGATGTCGTGGAGACGATGTGGTTGTGAAGATTCCCATTCATCACAAGTATTTGGTTGGTTTAGTAGAAATTTGAATGTTTGTTGTGTTGAAATTATCGTGTGCATGGCATCCGGTGACTACCATTTTGTTATACCCCTTCGCTCGGATGAGAGTTCCATGAAGGTGCCAAGGAGGTTAATCAAGAATGGTATTCTGAGGGTGAAAGATGTAGTGATTTTTATTGATCCTGTTGGGAACAAAATCTTCAAGATTAGGATAACTGGTCCTGATCTTTTTGATATTAATTATAAGGTTGGTGATGATGGTCTTTTTGTTGGAGGTGTTAGTGGGAATGACAATGTTGGTGGTGATGGTAGTGATATTGATAATCAGTTTCAGCTTTTGTGGTCTGTCCAATTATCTGAAGCCCAAGCGTCTGGTCGTCAGACTCTTTGCATTCCTGTGAGGATTGTCCGTGAATATTTTGATTTCCAGCAACGCTATATGGTGGTTGACTTTGGTTCAAACCAGTGTGAGCATTGGCATCTTTTGTGGACAAAGACTAGGCGGGACAAGTGTGCCATTGGCATGGGGTGGTACAAGTTTTGCTCTGACAAGAAGCTTAATAAGGGTGATAAAGTGCACTTCATGTATGAAAGCTCGGAGAAGATATTCCGTGTTGATGTGGAGTCCTCTGCCTAA 1596 0.3947 MLVQQCQTEVDVTPFDGGSSTSHSASVSVKRKLENSYVVNGDDPNDIFPKDLQKDMEDVCDVDQYLSLDKLECSIDDNKNNVRVPSLSQGTRGRFSGSSVLDGESSRFTSYDIDFSSYRASHLFDEGDDAIDLMLNVEQESLIEHVLFLPSEDEVCLDLGDNVFSCANCGAMTWYEERSDKSNQNSNPQFSICCMKGKIILPYLSRPPELIWNLVNGFDARSVHFIENIRSYNSMFAFTSIGGKIETSFNNGGGPPQFILSGQNFHRIGSLLPVEGEKPKFSQMYIYDTSNEVSNRTTIFRLSTLMSWRRCGCEDSHSSQVFGWFSRNLNVCCVEIIVCMASGDYHFVIPLRSDESSMKVPRRLIKNGILRVKDVVIFIDPVGNKIFKIRITGPDLFDINYKVGDDGLFVGGVSGNDNVGGDGSDIDNQFQLLWSVQLSEAQASGRQTLCIPVRIVREYFDFQQRYMVVDFGSNQCEHWHLLWTKTRRDKCAIGMGWYKFCSDKKLNKGDKVHFMYESSEKIFRVDVESSA* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00340 531 Gene3D - 426 529 IPR015300 -
Rops8g00340 531 Pfam B3 DNA binding domain 438 521 IPR003340 GO:0003677
Rops8g00340 531 SUPERFAMILY DNA-binding pseudobarrel domain 437 520 IPR015300 -
Rops8g00340 531 ProSiteProfiles B3 DNA-binding domain profile. 434 531 IPR003340 GO:0003677
Rops8g00340 531 PANTHER DNA BINDING PROTEIN-LIKE 212 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00340 Rops-Chr8 6515811 6525806 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g00340 B3 3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00340 - - adu:107465235 221.476