Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00337 ATGCAAGCCAGGGAGATTACAGGTCTCAATTATTTACTCCCTTCAGACCCTTCTTCTTACCCAAGTCACTACAGCATGATTCAGAACAACATCCCCACATTCCAACTTCATAAATTCTCTAACCAATTCTACCATTTCCAGAACCCTCCTCAAGTACTTCAAGACTTTAGTCCTCATTCCTCATGTATCAGTAGCAATTCAACTTCTGATGAAGCAGATGAGCAACAACAAAGTCTCATCAATGAGAGGAAACACAGAAGGATGATATCAAACCGAGAATCAGCTCGTAGGTCACGCATGAGGAAGCAAAAGCACCTTGATGAGCTTTGGTCAATGGTGGTTTGGCTAAGGAATGAGAATCACCAACTACTAGACAAGCTAAACCATGTGTCAGAGTCACATGATAAAGTCATTCAAGAAAATGTTCAGCTGAGAGAGGAAGCTTCAGAACTTAGACAAATGCTATGTGACATGAAGCTACATAGTCCATGGCATCCCTTGAGCCCCCTTGAAGATGTTCCAAGCAATTCACCTTATATCAAATCTGATTCCTCAAACCAATCAACCTCAAGTTCTATGGACCTGCTTGGCTAA 594 0.4175 MQAREITGLNYLLPSDPSSYPSHYSMIQNNIPTFQLHKFSNQFYHFQNPPQVLQDFSPHSSCISSNSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLDELWSMVVWLRNENHQLLDKLNHVSESHDKVIQENVQLREEASELRQMLCDMKLHSPWHPLSPLEDVPSNSPYIKSDSSNQSTSSSMDLLG* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00337 197 MobiDBLite consensus disorder prediction 175 197 - -
Rops8g00337 197 Gene3D - 81 137 - -
Rops8g00337 197 MobiDBLite consensus disorder prediction 55 75 - -
Rops8g00337 197 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 144 IPR004827 GO:0003700|GO:0006355
Rops8g00337 197 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 9 164 IPR044521 -
Rops8g00337 197 SMART brlzneu 79 143 IPR004827 GO:0003700|GO:0006355
Rops8g00337 197 MobiDBLite consensus disorder prediction 167 197 - -
Rops8g00337 197 MobiDBLite consensus disorder prediction 55 77 - -
Rops8g00337 197 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Rops8g00337 197 Pfam bZIP transcription factor 83 138 IPR004827 GO:0003700|GO:0006355
Rops8g00337 197 CDD bZIP_plant_GBF1 84 135 IPR045314 GO:0003700|GO:0006355
Rops8g00337 197 FunFam BZIP transcription factor 81 132 - -
Rops8g00337 197 SUPERFAMILY Leucine zipper domain 83 133 IPR046347 GO:0003700|GO:0006355
Rops8g00337 197 Coils Coil 134 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00337 Rops-Chr8 6472772 6473630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00337 18 164 bZIP Transcription Factor Family AT3G30530 60.000 2.68e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops8g00337 bZIP_1 1.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00337 - - aprc:113863596 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00337 8 6472772 6473630 Rops8g00337 8 6472772 6473630 ECH
Rops5g01558 5 32479364 32480159 Rops8g00337 8 6472772 6473630 PCT