Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00334 ATGTTGGAGCAAGAAGTAAGCACCACCACCACAACCACCGTAACGGCTGCGGCCACGTGGGCACGTATGTGTGACACGTGCCGCTCCGCCACATGCACCGTGTTCTGCCGCGCCGACTCGGCGTACCTCTGCGCCGGTTGCGACGCACGTGTGCATGCGGCGAACCGTGTGGCTTCACGTCACGAGCGCGTGTGGGTTTGTGAGGCCTGTGAACGTGCTCCGGCGGCGTTTCTATGTAAAGCTGATGCAGCTTCTCTTTGTTCTTCATGTGATGCTGATATCCACTCGGCTAACCCTCTTGCTAGCCGCCACCAACGTGTGCCTATTCTTCCAATCTCCGGTTGTGTTTATGGCCCTCCGGCAACCCTTTTGGGCGGTGAAGATGATGGCTTTGTTGGTGGTGGTGGTGGTGAGATAGAGGAAGATGAGGAGGAAGGTGTTGATATGGAGGATGAAGATGAAGCTGCTTCATGGTTGTTGTTGAATCCTGTGAAGGGTAATAATAACAACAACAATAATAACAATCAGCAGGGTAATGGGTTCTTGTTTAGTGGTGAGGTTGATGAGTATTTGGACCTTGTTGATTGTAATTCTTGTGGTGGCAACAACCAGTTCACTACTACTACTGATGATCATTACAGTCAACAACAGAAGCAACAGCAGCAACATTATGGTGGTCTTCCTCCGAAGAGTTATGTTGGTGATAGTGTGGTTCCAGTTCAGCAACAACAGCAGGGACAACATTTTCATCTTGGGTTGGAGTTTGAGTCCTCCAAAGCTGGGTTCAGTTACAATGGTTCTATTAGTCAAAGTGTATCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAAATGTCTCAATGTCCTATTCAAGAACCCCCAAAGGGACAATTGACCTATTTTCTGGACCTTCCATTCAGATGCCTTCCCATCTTACTCCAATGGACAGAGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCTTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAAGGTCGATTTGCCAAGAGAACAAATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACAACACTAATGACTGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1164 0.4742 MLEQEVSTTTTTTVTAAATWARMCDTCRSATCTVFCRADSAYLCAGCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGCVYGPPATLLGGEDDGFVGGGGGEIEEDEEEGVDMEDEDEAASWLLLNPVKGNNNNNNNNNQQGNGFLFSGEVDEYLDLVDCNSCGGNNQFTTTTDDHYSQQQKQQQQHYGGLPPKSYVGDSVVPVQQQQQGQHFHLGLEFESSKAGFSYNGSISQSVSVSSMDVGVVPESNVSMSYSRTPKGTIDLFSGPSIQMPSHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTNVEAEVDQMFSTTLMTEVGYGIVPSF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00334 387 MobiDBLite consensus disorder prediction 208 227 - -
Rops8g00334 387 SMART bboxneu5 67 109 IPR000315 GO:0008270
Rops8g00334 387 SMART bboxneu5 19 66 IPR000315 GO:0008270
Rops8g00334 387 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Rops8g00334 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 377 IPR045281 GO:0009909
Rops8g00334 387 CDD Bbox1_BBX-like 24 66 - -
Rops8g00334 387 MobiDBLite consensus disorder prediction 208 226 - -
Rops8g00334 387 ProSiteProfiles CCT domain profile. 318 360 IPR010402 GO:0005515
Rops8g00334 387 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Rops8g00334 387 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Rops8g00334 387 Pfam CCT motif 318 360 IPR010402 GO:0005515
Rops8g00334 387 CDD Bbox1_BBX-like 66 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00334 Rops-Chr8 6404588 6407173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00334 17 387 C2C2-CO-like Transcription Factor Family AT3G02380 55.469 4.71e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops8g00334 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00334 K12135 - tpra:123889374 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01571 5 32749492 32750934 Rops8g00334 8 6404588 6407173 PCT