Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00313 ATGAATTCAAAACAGAAGAAAGAGAGGACCTCAAAAGCTGAAAGACGTGCTCTTCAGGAAGCTCAACGAGCTGCAAAGGCTGCTACAAAAGCTGAAGGAAATAAGGCATCTGGAACTGCAACTTCACTGAATGCAAAATCAACTAAAGCTGCAAAGCCCTTGCAAAAAGTTGATAATGCTTCAGTTGCAGCCTCTGACAAGAAGGGAAGTGATCGTCCATCAGAAAAGAATAGAAAGAAAGATGCTCCTCAACCCCGCATGCAGTATGATGATAAGACCAGAGTGGAGAAAGCTAAACGGCGTGCTGTGGTAAAACAAACTGAAGCTAGGATCAGAGTTGAGCTATTCAGGCATTTGCCACAGTATGAACATGGGAATCAGCTTCCTGATCTTGAGGCAAAATTTTTCCAGCTTGATCCTGTGCATCCTGCAGTTTTCAAGGTGGGTTTGCAGTATTTGTCTGGAGATATATCTGGTGGCAATGCTCGTTGTATTGCAATGCTTCGAGCATTTCAAGAGGCCATCAAAGGCTATCGAGTTCCACCTGAGAAGGCTCTCGTGAGAGACTTGACAGCAAAAAAAAGTAGCTATGTATCATTCCTTATTGAGTGTCGACCTCTTTCTGTCAGCATGGGAAATGCAATTAGATTTGTCAAAAGTCGAATTGCCAAGCTACCTCTGACACTCTCTGAGTCAGAATCAAAAATTTCTCTTCAGTCAGATATTGAGCGTTTTATAAACGAAAAGATTATACTTGCCAACAAGGTGATGGTCAAGCATGCTGTCACAAAAATAAGAGACGGTGATGTTCTTCTTACTCATGGGTCATCATCGGCAGTTGAAATGATACTGTTACATGCACATGAGTTAGGGAAGCAGTTTCGAGTTGTAGTAGTAGACTCTCGTCCACAGCTTAGGGGGAAACTTTTGATTCGGAGGCTGGTGGAGAAAGGTCTTAGTTGTACATACACTCATATAAATGTTGTTTCCTACATAATGCATGAAGTCACTCGAGTTTTTCTGGGTGCTTCATCAGTGTTGTCTAATGGAACAGTTTATTCAGGAGTTGGGACTGCATGTGTTGCAATGGTTGCTCATGCATTCCACGTCCCTGTTATAGTATGTTGTGAGGCTTATAAGTTTCATGAAAGGGTACAACTTGATTCAATATGCTCCAATGAACTTGGTGATCCAGATATCATTTCAAAGGTTCCAGGTAGAGAGGATGTTAACCACTTGGATGCTTGTGCCAATACTGAAAACCTGCAACTTCTAAATCTGATTTATGATGCAACGCCTTCAGATTATGTTTCAATGATAGTCACAGATTATGGCATGGTCGAGCCTCGTTTGAAGGCTAGGTTTGTATTTTCGATTGGAGGTCGGGCTTCGTCTGAAGGCTGGGCCCGCCTTTATAGCCAAGCTGAGCTCGTATTTATGTTGGAGGTCGGGCTTCGTCTGAAGGCGAGGCCTGTCTTTTATAGCCAAGCTGAGCTCATATTTATATTGGAGGTCAACTTCGTCTGA 1527 0.4276 MNSKQKKERTSKAERRALQEAQRAAKAATKAEGNKASGTATSLNAKSTKAAKPLQKVDNASVAASDKKGSDRPSEKNRKKDAPQPRMQYDDKTRVEKAKRRAVVKQTEARIRVELFRHLPQYEHGNQLPDLEAKFFQLDPVHPAVFKVGLQYLSGDISGGNARCIAMLRAFQEAIKGYRVPPEKALVRDLTAKKSSYVSFLIECRPLSVSMGNAIRFVKSRIAKLPLTLSESESKISLQSDIERFINEKIILANKVMVKHAVTKIRDGDVLLTHGSSSAVEMILLHAHELGKQFRVVVVDSRPQLRGKLLIRRLVEKGLSCTYTHINVVSYIMHEVTRVFLGASSVLSNGTVYSGVGTACVAMVAHAFHVPVIVCCEAYKFHERVQLDSICSNELGDPDIISKVPGREDVNHLDACANTENLQLLNLIYDATPSDYVSMIVTDYGMVEPRLKARFVFSIGGRASSEGWARLYSQAELVFMLEVGLRLKARPVFYSQAELIFILEVNFV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00313 508 Coils Coil 4 31 - -
Rops8g00313 508 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g00313 508 MobiDBLite consensus disorder prediction 1 101 - -
Rops8g00313 508 SUPERFAMILY NagB/RpiA/CoA transferase-like 113 451 IPR037171 -
Rops8g00313 508 MobiDBLite consensus disorder prediction 68 101 - -
Rops8g00313 508 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 3 452 - -
Rops8g00313 508 MobiDBLite consensus disorder prediction 34 49 - -
Rops8g00313 508 Gene3D - 253 455 IPR042529 -
Rops8g00313 508 Pfam Initiation factor 2 subunit family 157 449 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00313 Rops-Chr8 6120456 6126094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00313 4 449 Eukaryotic Initiation Factors Gene Family AT5G38640 76.549 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00313 K03680 - gmx:100785938 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00313 8 6120456 6126094 Rops8g00313 8 6120456 6126094 ECH