Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00307 ATGTCTACCATGGTTTCTGCTCTTGCTCAAGTTATGGGAAATACCAATCGGAGCACACACATGGCACAGTCAACTTCCTTTCCTATCTCAAACGAAGAACCTCAACCATCTCAACCTCTTCTAGATCAAGGTAAAGAGGTCAAAAAGAAACCACACTACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATACGTGATCCAAAAAAAGCAGCAAGAGTGTGGCTAGGGACCTTTGACACAGCTGAGGGTGCAGCCATTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCTAAGCTTAATTTCCCTGAAAGAGTTCAAGGGAACACTCAAGTTAGCTATGTGCATCAAGGTTCAGCTACTTCTACCACTACCACTAGTGCTAGTGCCATCCAACAAGTTAGTGTTCCTCCCTCATTGTCCACACATGAACATGATCATCACCAAGTTTTTCCAAATCTGTTTCACTATGCACAGATTCTTTCAAGTGATGATGCACAATTCCCTTATTACACATCCCATCTTTTCAATCAACAACAACAACAACAACAACAACAACAGCCTTTCAGTTCCCAATTTTCTACCACTTTGTCTTCCTCTTCATCTTCCTCATCTTACTACTACAACCAACAACAACAGCATGATGAAGGACATCGTTACCCAGAACAGTAG 690 0.4261 MSTMVSALAQVMGNTNRSTHMAQSTSFPISNEEPQPSQPLLDQGKEVKKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEGAAIAYDKAALKFKGTKAKLNFPERVQGNTQVSYVHQGSATSTTTTSASAIQQVSVPPSLSTHEHDHHQVFPNLFHYAQILSSDDAQFPYYTSHLFNQQQQQQQQQQPFSSQFSTTLSSSSSSSSYYYNQQQQHDEGHRYPEQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00307 229 MobiDBLite consensus disorder prediction 14 38 - -
Rops8g00307 229 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Rops8g00307 229 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Rops8g00307 229 MobiDBLite consensus disorder prediction 14 55 - -
Rops8g00307 229 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Rops8g00307 229 MobiDBLite consensus disorder prediction 183 220 - -
Rops8g00307 229 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Rops8g00307 229 CDD AP2 51 110 IPR001471 GO:0003700|GO:0006355
Rops8g00307 229 PANTHER DNA-BINDING DOMAIN 33 204 IPR044808 GO:0003700|GO:0009873
Rops8g00307 229 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Rops8g00307 229 MobiDBLite consensus disorder prediction 183 229 - -
Rops8g00307 229 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Rops8g00307 229 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Rops8g00307 229 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00307 Rops-Chr8 5968499 5970600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00307 4 182 AP2-EREBP Transcription Factor Family AT5G13330 47.222 5.71e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops8g00307 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00307 - - gmx:100500531 260.381