Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00305 ATGGCTTTGGAGAAGCCTTCCAACCCCAACTCCGTTAACGGCGAACCAGACGGAGTCGGTAACGGCGCGACGCCATCCTCCGCCGCATACGGAGGCGACGATGTAAGGCCGACGGCGAGGCTTCCGCGGTGGACGAGGCAGGAAATATTGGTCCTCATACAGGGCAAGGCCGACGCCGAGAGCCGGTTCCGGCACGGCCGTGCCTCCGGTCCGGCGACCGGTTCGAGCGAGCCGAAATGGGCGTTGGTCTCTTCGTACTGCAAGAAGCATGGGGTGAACCGGGAACCGGTTCAGTGCCGGAAAAGGTGGAGCAACCTCGCCGGAGATTATAAGAAGATCAAGGAGTGGGAGTCTCAGATAAGGGACGAAACGGAGTCGTTTTGGTTGATGAGGAATGATTTGAGGAGAGAGAGGAAGTTGCCCGGTTATTTTGACCGGGAGGTGTATGATATTCTCGACTCGCCGCCGTCTGCAGCGGCAGATACGGCGGCTCCGGCAACTGCGACGGTGGCAGAGGTGGTGGTAGGTGATGAGGAGGTGCACTTGTATGATAGTAATCGAAGGGTCGGTGGTGGAGAAGATGGGTTATTCTCGGATTGTGAGAAAGACGATGTTTTTGTTTCTACCAAGGATGTTCCTGCTCCTGTTCCCATCTCAGAGAAGCAATATGAACCGATCCTTCATGGTTGTCAAGGGGAAGGCAATGCTCAAGGTGCTACCAATGAGAAACAGCCAGCCTCAAATCCAGAAGTGGGTTCTACATCTCAAGGGGGAAGAAAGAGGAAGCGGTTTGCAAGTGATGAAGAGGAGGAAACTTTGCAAAGTCAATTAATTGATGTGTTAGACAAAAATGGGAAGATGCTACGTGATCAACTTGAGGCTCAGAACTTCAATTTGCAGTTGGGTCGCCAGTACCAGAAAGACACTACAAGTAGCATAGTTGCTGTACTTGAAAAGCTTGCAAATGCTCTAGGGAGAATTGCTGATAAATTATAG 996 0.5231 MALEKPSNPNSVNGEPDGVGNGATPSSAAYGGDDVRPTARLPRWTRQEILVLIQGKADAESRFRHGRASGPATGSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQIRDETESFWLMRNDLRRERKLPGYFDREVYDILDSPPSAAADTAAPATATVAEVVVGDEEVHLYDSNRRVGGGEDGLFSDCEKDDVFVSTKDVPAPVPISEKQYEPILHGCQGEGNAQGATNEKQPASNPEVGSTSQGGRKRKRFASDEEEETLQSQLIDVLDKNGKMLRDQLEAQNFNLQLGRQYQKDTTSSIVAVLEKLANALGRIADKL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00305 331 ProSiteProfiles Myb-like domain profile. 36 107 IPR001005 -
Rops8g00305 331 MobiDBLite consensus disorder prediction 234 255 - -
Rops8g00305 331 MobiDBLite consensus disorder prediction 1 17 - -
Rops8g00305 331 CDD GT1 42 114 - -
Rops8g00305 331 Gene3D - 44 112 - -
Rops8g00305 331 Pfam Myb/SANT-like DNA-binding domain 43 129 IPR044822 -
Rops8g00305 331 MobiDBLite consensus disorder prediction 228 269 - -
Rops8g00305 331 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 9 331 - -
Rops8g00305 331 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00305 Rops-Chr8 5890050 5893600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00305 43 115 Trihelix Transcription Factor Family AT1G33240 32.877 9.56e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops8g00305 Myb_DNA-bind_4 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00305 - - gmx:100788594 501.901