Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00304 ATGCAATTCGCAAAGCTCGATGATTCTCCTATGTTCCGGAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGACTTGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGGGGGCATAATGACCCCATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCTTAAGAGAAATTGGAACATACAAGGAAGTCCTTAGATCACAGGTGGAGCATATGTTAAATGACAGATTGCTTCAGTTCGTCAATATTGATTTACAAGAGGTCAAGGAAGCACGGAAACGCTTTGATAAAGCTAGCCTTATTTATGACCAGACTCGTGAAAAGTTTCTGTCACTGAGAAAAGGCACAAAAAGTGATGTAGCTGCTGCCTTAGAAGAGGAGCTTCATAGTGCAAGATCTACGTTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAAAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGAACCATGGATGCGCATCTTCGTTACTTCAAACAGGGGTATGAACTGCTGCACCAAATGGAGCCATATATTAATCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCGAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGCAGATTGATCGAGAGAGTAGGTGGGCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCAGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGGGGAATGCTGTATTACTACCGTAAACAGTGTAGCAAATCATCTGGGTCTAGTAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATTATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCATACTGTGAACCTGCTTACATCAACAATCAAAGTTGATGCTGACCAATCAGATCTGAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTATACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCTGAAAGGATGTTACCTGCAAGTCCAATGGGAAGTGGTCATAATAGATCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCGGATTTCGATCACACTGCTGTTGAAGAATGTGCAGCTGATAAAAATCTTGCTTCTGCGCATCTGGAGCGCCCCTCAAGAAGTTTGCACCAGCAGCGATCCTGTACTAAAAGTGAGAAGCCAATTGACGTGTTGAGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGCGGTGCCCCTGAACCTGATTGGGCATCTCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAACTATTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCCGATAAATCCATGATGCTTTTCATCAGCAAACCTTGTCAATCTGATTCTCTATCTGTCAAGGAAAAGTTTATCCATGCAAAGTATGCAGAGAAACTTTTTGTTCGCAAGCCAAAGGACAATCAATACCGTCTCCTGGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTATACCGCTACATTGTCAATTCTGACATTGATGTTAATGCTGTTTATGATCAAACATGTGGCAGCTCTTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACAAGCCATGATCACAGCTCTAATACATTGGACTGGTCCTCTAATAGCTCTTTGAATTCGGTGGGTATGAAAGAAGGGCAGACCATGGATAATCTGGAGGGGTGCACACTACTTCACCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTCCTACAATATGGTGCAAATATTAATGCAACTGATTTGAGAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGCAAATCTCAACTAGCAAGATTATTGCTTTCAAGGGGAGCTGATCCTCGAGCTGTGGATGAGCAGGGAAGAACCCCTATTGAGCTTGCTGCAGAGTCAAATGCTGTTGACAGAGAAATCCATGCTGACTGA 2463 0.4255 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKSDVAAALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHNRSTSESSSFESSDFDHTAVEECAADKNLASAHLERPSRSLHQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGLSKSDKSMMLFISKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYRLLVAQQIWEAVRANDKKAVYRYIVNSDIDVNAVYDQTCGSSLTLAKVMLLQEQTSHDHSSNTLDWSSNSSLNSVGMKEGQTMDNLEGCTLLHLACETADIGMLELLLQYGANINATDLRGQTPLHRCILKGKSQLARLLLSRGADPRAVDEQGRTPIELAAESNAVDREIHAD* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00304 820 Pfam Ankyrin repeats (many copies) 736 787 IPR002110 GO:0005515
Rops8g00304 820 ProSiteProfiles Ankyrin repeat profile. 766 798 IPR002110 GO:0005515
Rops8g00304 820 CDD ArfGap 503 632 - -
Rops8g00304 820 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 646 - -
Rops8g00304 820 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Rops8g00304 820 MobiDBLite consensus disorder prediction 253 269 - -
Rops8g00304 820 Pfam PH domain 294 427 IPR001849 -
Rops8g00304 820 Gene3D - 285 438 IPR011993 -
Rops8g00304 820 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Rops8g00304 820 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Rops8g00304 820 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Rops8g00304 820 Coils Coil 151 171 - -
Rops8g00304 820 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Rops8g00304 820 ProSiteProfiles Ankyrin repeat profile. 733 765 IPR002110 GO:0005515
Rops8g00304 820 PANTHER CENTAURIN/ARF 3 818 IPR045258 GO:0005096
Rops8g00304 820 Gene3D - 645 815 IPR036770 -
Rops8g00304 820 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Rops8g00304 820 CDD BAR_SFC_plant 14 215 IPR035670 -
Rops8g00304 820 MobiDBLite consensus disorder prediction 446 460 - -
Rops8g00304 820 Pfam Putative GTPase activating protein for Arf 503 640 IPR001164 GO:0005096
Rops8g00304 820 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Rops8g00304 820 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Rops8g00304 820 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Rops8g00304 820 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Rops8g00304 820 SUPERFAMILY ArfGap/RecO-like zinc finger 500 640 IPR037278 -
Rops8g00304 820 SMART PH_update 293 430 IPR001849 -
Rops8g00304 820 ProSiteProfiles Ankyrin repeat region circular profile. 733 764 - -
Rops8g00304 820 Coils Coil 227 247 - -
Rops8g00304 820 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Rops8g00304 820 SUPERFAMILY Ankyrin repeat 657 813 IPR036770 -
Rops8g00304 820 CDD PH_ACAP 295 432 - -
Rops8g00304 820 SMART ANK_2a 733 762 IPR002110 GO:0005515
Rops8g00304 820 SMART ANK_2a 766 795 IPR002110 GO:0005515
Rops8g00304 820 MobiDBLite consensus disorder prediction 438 460 - -
Rops8g00304 820 Gene3D Arf GTPase activating protein 481 644 IPR038508 -
Rops8g00304 820 ProSiteProfiles Ankyrin repeat region circular profile. 766 798 - -
Rops8g00304 820 MobiDBLite consensus disorder prediction 248 270 - -
Rops8g00304 820 SUPERFAMILY PH domain-like 293 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00304 Rops-Chr8 5875613 5886435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00304 512 639 C2H2 Transcription Factor Family AT4G21160 41.860 2.21e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00304 K12489 - gmx:100789134 1488.01