Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00300 ATGTCTTCTCTACTTGCAATGTGTGTAGCACTCCTTCAGCTATGCTCTCTTGTAGCTGCACACCCTGATAGGATCACTCTCTTACCAGGTCAACCCCATGTTGAGTTTCATCAGTTTTCTGGTTATGTCACCATTGATGACAAAAACCAAAGATCATTGTTTTTCTACTTTGCTGAAGCTGAGAAAGATGCTGTTTCCAAACCCCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTGGGGGTTGGTGCATTTTCAGAGAATGGACCATTTAGGCCTAAAGGAGAGGCCTTGGTTAGGAACCAATTCAGCTGGAACAAAGAGGCAAATATGTTGTACTTGGAAACACCAATTGGAGTGGGATTCTCTTATTCGGCTGATACTTCCTCTTATGAGGGTGTGAATGACAAGATTACAGCCAGGGATAATCTTTTGTTCTTGCAAAACTGGTTTATAAAGTTCCCAGAATACAGAAACAGAAGTTTGTTCATTGTAGGAGAAAGCTATGCTGGTCATTATGTTCCCCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTCAATTTAAAAGGCATTGCTCTTGGTAACCCAGTTCTAGAATTTGCATCAGATTTCAATTCTAGAGCTGAGTTCTTCTGGTCTCATGGATTGATCTCAGATTCAACATACAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAGTGGCTCAGTTTCTCCTATCTGTTCAAGTGTAATGAGCCTAGTTACCACAGAAACCAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCAGTGTTTTCACAAACCAAAGTCCTCAATCCCCAGCAAGTTACTGAAACGATAGATGTATGTGTGGAAGATGAAACAGTCAATTATCTGAACAGGAAAGATGTTCAATCAGCTTTACATGCACGTCTTGTTGGGGTACAAAGATGGTCTGCATGCAGCAATGTCTTGGATTATGAGTTGCGTGACTTGGAGATACCAACAATCACGGTTGTGGGCAAGCTAGTCAAGGCAGGGATACCAGTATTGGTCTACAGTGGTGATCAGGATTCAGTTATTCCCTTGACTGGAAGTAGAACTTTAGTACATCGATTGGCCAAAAAACTAAGATTGAAGACCACTGTGCCATATAGGGTCTGGTTTGAGGGGCAACAGGTGGGTGGCTGGACTCAAGTTTATGGTAACATCCTTTCATTTGCTACCATTAGGGGAGCATCACATGAAGCTCCATTTTCACAGCCTGAGAGATCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGCCGAGCTCTACCAGAAGAGTTTTGA 1365 0.4183 MSSLLAMCVALLQLCSLVAAHPDRITLLPGQPHVEFHQFSGYVTIDDKNQRSLFFYFAEAEKDAVSKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEALVRNQFSWNKEANMLYLETPIGVGFSYSADTSSYEGVNDKITARDNLLFLQNWFIKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFASDFNSRAEFFWSHGLISDSTYKMFTSVCNYSRYVREYYSGSVSPICSSVMSLVTTETSRFVDKYDVTLDVCISSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQRWSACSNVLDYELRDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLTGSRTLVHRLAKKLRLKTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEGRALPEEF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00300 454 Gene3D alpha/beta hydrolase 20 281 IPR029058 -
Rops8g00300 454 FunFam Carboxypeptidase 18 451 - -
Rops8g00300 454 SUPERFAMILY alpha/beta-Hydrolases 29 450 IPR029058 -
Rops8g00300 454 ProSitePatterns Serine carboxypeptidases, histidine active site. 417 434 IPR033124 GO:0004185
Rops8g00300 454 Gene3D - 349 447 - -
Rops8g00300 454 Gene3D - 302 338 - -
Rops8g00300 454 FunFam Carboxypeptidase 348 447 - -
Rops8g00300 454 ProSitePatterns Serine carboxypeptidases, serine active site. 166 173 IPR018202 GO:0004185
Rops8g00300 454 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 434 IPR001563 GO:0004185|GO:0006508
Rops8g00300 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 126 IPR001563 GO:0004185|GO:0006508
Rops8g00300 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 103 115 IPR001563 GO:0004185|GO:0006508
Rops8g00300 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 177 IPR001563 GO:0004185|GO:0006508
Rops8g00300 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 417 430 IPR001563 GO:0004185|GO:0006508
Rops8g00300 454 Pfam Serine carboxypeptidase 30 447 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00300 Rops-Chr8 5862619 5865808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00300 310 450 Calmodulin-binding Proteins AT2G22960 26.950 6.83e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00300 K16297 - gmx:100805130 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00300 8 5862619 5865808 Rops8g00300 8 5862619 5865808 ECH