Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00293 ATGGCATTGCCTCCTCAATTGCAAGATGAAGACACCAACATCGACGTTCACACCACACGTGGCGCTCCCATTCGCTACCTTCCCCTCGATCATCTCTACTCCGCCACGGCACCTTGTAGTGGTTCCTCCAATGTCATGTCGAAGAAGGTCAAGGCACGCAAACTCAACATCAACAACAACAACAACAATCACTTCCATAACGAAATCGATAACAGCAACAGCGATAGTGAGCCACCGCTAGATCATCATAACAATAAGAAAACGACGTCGTCCTCGTTGGTGCTTCCCAAGCCTCCTCTGTTGTATGTCTACACTCGCCGCCGACGTCGCAAGAGGAGTTCCTCTCCGACGGTGTCGTTTTACCGGTCTTTGTTGGGTCGGGTTGACAAGGAGAGTGAGGATGATTCGGAGAGGAGGGTGCCGAAGAAGAGGAAAACTGGGTGCAATGAGTTGGAGAAATTGGGGGTGGATTTGACCTCGCTTGGGAACCTAGATGGGCCTCGATTGAGGGAATGTCGAACTCAAATTGGGAATTCTGGCATTGCCGGTGGTGGTTCTTCTTTGGAGAATAATCTCCCCAAGTTGCTGCCTGAATCTCGCACTGTGAAGAGATGGGTCGCGTTGAGTACTGATAATGCTGATCCCGAGGCATTCGTGGGATTAAGATGCAAGGTTTATTGGCCCATGGATTTAAGATCGTACACCGGCTATGTCAAAGGTTATGATATGGAAACCAAGATACATCATATCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAACGAAAATGTAAAGTGCCATGTTTCCCGTGACGAGATGAAACGTTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAATTTCTCTGATTATGATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCATTTGCTAGCAACTGTAAGGGTTTAAAAACATTTATAGGAGGAAGATCAGTTCCTGTCCAATTCTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAGCAAGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAGTGCAAGAAACTTAGTTTTATTGAAGGTTTAGAAGAGGCAAAGAGGTATTTAAGTGAACAGAAGCTTCCTTTGGAGATGCTAGAATTGCAGAAAAGATGTACAGTTGATGACAGTAACGATGTAAGTGGAGAGGATGGAGGATGTACAGATTCAGGTGAAGATTGTTTACATGACAAAGGGACTTGGGCAGAACTTAACAACATTGAAACTTTTCCTTATGAAGTAGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTACATCTTTTGGGGATGGGAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCGGTTACTGACCCTAAAGTATCTGTCCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTGCGACCTCTGTTTAGAGTCACAGTTGATGGTGGAGAGCAGTTCAATGGTGATACACCATCTGCTTGCTGGAATCAAGTATACAAAAGGATAAAGAAACTGGAAAAGGATGACTCTGAAGGTTCTGTTGCTGAAGATGGGGTAGAAAGGGGTTACGAATCTGGGTCAGATATGTTTGGTTTCTCTAATCCTAAAGTGGCTAAACTTATACAGGGATTATCTAAATCCAAAGTCTCTTCGAAGAAATCAATTTGCAAGTTAGGTTCCAGAAGATATAATGACTTGCCTGTTGGTTATAGACAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTACGGGGAACTGGAGCCTGTTAATGGAGTGCTATGGTTGTGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGCAGTATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAGCTCTTGTCGAGTAGCATATCATCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAACGAGGACAGGCTCTATCTGCTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGACAGCCATCTCATGAACATTCTGTTGCTGATGAGCGAATTGTTCGAGTTGCCGGTCAATGTTCAGACTATGAACCACCACCCAATCCGTCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGTTTGTTTGTAGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGATCGTTAAACAATCCAGAGCCTTCTGGCAGAGGAGTTTGCTCCAAATTCTTTTGTACCCAACAAAGGCTGGGAACCTCTCTGATTGACGCTTCAAACAGCATACTTTCTATTGCTGAGAAATATAAATACATGAGGGAAACCTTTCGCAAAAGGCTAGCATTTGGGAAATCAGGAATTCACGGATTTGGCATCTTTGCAAAGCATGCATATAAAGGCGGAGACATGGTGATTGAATACACCGGCGAACTTGTTAGACCTCCTATAGCTGACCGGAGAGAGCACTTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGTATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTATAAGCGTAAATGGCGATGAGCGTATTATAATTTTTGCGAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAATGCCGGGGTATAGTAAATGATACTGAGGCAGAAGAACGAGCTGCTACCCTATATGCACCGAGAAGTGAATTAATAGATTGGAGAGGAGAATGA 3288 0.4364 MALPPQLQDEDTNIDVHTTRGAPIRYLPLDHLYSATAPCSGSSNVMSKKVKARKLNINNNNNNHFHNEIDNSNSDSEPPLDHHNNKKTTSSSLVLPKPPLLYVYTRRRRRKRSSSPTVSFYRSLLGRVDKESEDDSERRVPKKRKTGCNELEKLGVDLTSLGNLDGPRLRECRTQIGNSGIAGGGSSLENNLPKLLPESRTVKRWVALSTDNADPEAFVGLRCKVYWPMDLRSYTGYVKGYDMETKIHHIKYDDGDEENLILSNENVKCHVSRDEMKRLKLSYAKVRDSNFSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESFASNCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKLSFIEGLEEAKRYLSEQKLPLEMLELQKRCTVDDSNDVSGEDGGCTDSGEDCLHDKGTWAELNNIETFPYEVGDLQILSLGKIVEDSTSFGDGRSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESKVRPLFRVTVDGGEQFNGDTPSACWNQVYKRIKKLEKDDSEGSVAEDGVERGYESGSDMFGFSNPKVAKLIQGLSKSKVSSKKSICKLGSRRYNDLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHEHSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNPEPSGRGVCSKFFCTQQRLGTSLIDASNSILSIAEKYKYMRETFRKRLAFGKSGIHGFGIFAKHAYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDERIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00293 1095 SMART fyrc_3 522 616 IPR003889 GO:0005634
Rops8g00293 1095 Pfam F/Y-rich N-terminus 461 511 IPR003888 GO:0005634
Rops8g00293 1095 MobiDBLite consensus disorder prediction 58 74 - -
Rops8g00293 1095 SMART PWWP_4 312 375 IPR000313 -
Rops8g00293 1095 SMART PHD_3 739 805 IPR001965 -
Rops8g00293 1095 SMART PHD_3 629 676 IPR001965 -
Rops8g00293 1095 CDD ePHD_ATX1_2_like 690 804 IPR041956 -
Rops8g00293 1095 SUPERFAMILY Tudor/PWWP/MBT 308 409 - -
Rops8g00293 1095 SMART fyrn_3 470 514 IPR003888 GO:0005634
Rops8g00293 1095 FunFam Histone-lysine N-methyltransferase 679 807 - -
Rops8g00293 1095 MobiDBLite consensus disorder prediction 58 93 - -
Rops8g00293 1095 Pfam PWWP domain 315 402 IPR000313 -
Rops8g00293 1095 CDD PHD_ATX1_2_like 629 675 IPR042010 -
Rops8g00293 1095 CDD Tudor_Agenet_AtEML-like 219 268 - -
Rops8g00293 1095 ProSiteProfiles FYR domain FYRC motif profile. 518 604 IPR003889 GO:0005634
Rops8g00293 1095 ProSiteProfiles Extended PHD (ePHD) domain profile. 681 805 IPR034732 -
Rops8g00293 1095 ProSiteProfiles SET domain profile. 931 1049 IPR001214 GO:0005515
Rops8g00293 1095 Pfam F/Y rich C-terminus 520 595 IPR003889 GO:0005634
Rops8g00293 1095 ProSiteProfiles PWWP domain profile. 314 377 IPR000313 -
Rops8g00293 1095 Gene3D - 456 596 - -
Rops8g00293 1095 ProSiteProfiles Zinc finger PHD-type profile. 627 678 IPR019787 -
Rops8g00293 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 676 807 IPR013083 -
Rops8g00293 1095 PANTHER PHD FINGER PROTEINS 48 1079 - -
Rops8g00293 1095 ProSitePatterns Zinc finger PHD-type signature. 630 675 IPR019786 -
Rops8g00293 1095 CDD PWWP_AtATX1-like 313 408 - -
Rops8g00293 1095 SUPERFAMILY FYVE/PHD zinc finger 622 691 IPR011011 -
Rops8g00293 1095 Pfam PHD-finger 642 676 - -
Rops8g00293 1095 ProSiteProfiles Post-SET domain profile. 1055 1071 IPR003616 -
Rops8g00293 1095 FunFam Histone-lysine N-methyltransferase 864 1088 - -
Rops8g00293 1095 Pfam SET domain 942 1048 IPR001214 GO:0005515
Rops8g00293 1095 Gene3D SET domain 889 1083 IPR046341 -
Rops8g00293 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 675 IPR013083 -
Rops8g00293 1095 SUPERFAMILY SET domain 928 1068 IPR046341 -
Rops8g00293 1095 CDD SET_SETD1-like 919 1067 - -
Rops8g00293 1095 ProSiteProfiles FYR domain FYRN motif profile. 455 514 IPR003888 GO:0005634
Rops8g00293 1095 Gene3D - 214 269 - -
Rops8g00293 1095 Gene3D - 302 413 - -
Rops8g00293 1095 SMART set_7 931 1055 IPR001214 GO:0005515
Rops8g00293 1095 Pfam PHD-zinc-finger like domain 683 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00293 Rops-Chr8 5732562 5749791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00293 630 775 C2H2 Transcription Factor Family AT3G14740 39.735 4.32e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops8g00293 zf-HC5HC2H_2 3.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00293 - - gmx:100808923 1858.57