Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g00293 | ATGGCATTGCCTCCTCAATTGCAAGATGAAGACACCAACATCGACGTTCACACCACACGTGGCGCTCCCATTCGCTACCTTCCCCTCGATCATCTCTACTCCGCCACGGCACCTTGTAGTGGTTCCTCCAATGTCATGTCGAAGAAGGTCAAGGCACGCAAACTCAACATCAACAACAACAACAACAATCACTTCCATAACGAAATCGATAACAGCAACAGCGATAGTGAGCCACCGCTAGATCATCATAACAATAAGAAAACGACGTCGTCCTCGTTGGTGCTTCCCAAGCCTCCTCTGTTGTATGTCTACACTCGCCGCCGACGTCGCAAGAGGAGTTCCTCTCCGACGGTGTCGTTTTACCGGTCTTTGTTGGGTCGGGTTGACAAGGAGAGTGAGGATGATTCGGAGAGGAGGGTGCCGAAGAAGAGGAAAACTGGGTGCAATGAGTTGGAGAAATTGGGGGTGGATTTGACCTCGCTTGGGAACCTAGATGGGCCTCGATTGAGGGAATGTCGAACTCAAATTGGGAATTCTGGCATTGCCGGTGGTGGTTCTTCTTTGGAGAATAATCTCCCCAAGTTGCTGCCTGAATCTCGCACTGTGAAGAGATGGGTCGCGTTGAGTACTGATAATGCTGATCCCGAGGCATTCGTGGGATTAAGATGCAAGGTTTATTGGCCCATGGATTTAAGATCGTACACCGGCTATGTCAAAGGTTATGATATGGAAACCAAGATACATCATATCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAACGAAAATGTAAAGTGCCATGTTTCCCGTGACGAGATGAAACGTTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAATTTCTCTGATTATGATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCATTTGCTAGCAACTGTAAGGGTTTAAAAACATTTATAGGAGGAAGATCAGTTCCTGTCCAATTCTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAGCAAGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAGTGCAAGAAACTTAGTTTTATTGAAGGTTTAGAAGAGGCAAAGAGGTATTTAAGTGAACAGAAGCTTCCTTTGGAGATGCTAGAATTGCAGAAAAGATGTACAGTTGATGACAGTAACGATGTAAGTGGAGAGGATGGAGGATGTACAGATTCAGGTGAAGATTGTTTACATGACAAAGGGACTTGGGCAGAACTTAACAACATTGAAACTTTTCCTTATGAAGTAGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTACATCTTTTGGGGATGGGAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCGGTTACTGACCCTAAAGTATCTGTCCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTGCGACCTCTGTTTAGAGTCACAGTTGATGGTGGAGAGCAGTTCAATGGTGATACACCATCTGCTTGCTGGAATCAAGTATACAAAAGGATAAAGAAACTGGAAAAGGATGACTCTGAAGGTTCTGTTGCTGAAGATGGGGTAGAAAGGGGTTACGAATCTGGGTCAGATATGTTTGGTTTCTCTAATCCTAAAGTGGCTAAACTTATACAGGGATTATCTAAATCCAAAGTCTCTTCGAAGAAATCAATTTGCAAGTTAGGTTCCAGAAGATATAATGACTTGCCTGTTGGTTATAGACAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTACGGGGAACTGGAGCCTGTTAATGGAGTGCTATGGTTGTGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGCAGTATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAGCTCTTGTCGAGTAGCATATCATCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAACGAGGACAGGCTCTATCTGCTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGACAGCCATCTCATGAACATTCTGTTGCTGATGAGCGAATTGTTCGAGTTGCCGGTCAATGTTCAGACTATGAACCACCACCCAATCCGTCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGTTTGTTTGTAGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGATCGTTAAACAATCCAGAGCCTTCTGGCAGAGGAGTTTGCTCCAAATTCTTTTGTACCCAACAAAGGCTGGGAACCTCTCTGATTGACGCTTCAAACAGCATACTTTCTATTGCTGAGAAATATAAATACATGAGGGAAACCTTTCGCAAAAGGCTAGCATTTGGGAAATCAGGAATTCACGGATTTGGCATCTTTGCAAAGCATGCATATAAAGGCGGAGACATGGTGATTGAATACACCGGCGAACTTGTTAGACCTCCTATAGCTGACCGGAGAGAGCACTTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGTATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTATAAGCGTAAATGGCGATGAGCGTATTATAATTTTTGCGAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAATGCCGGGGTATAGTAAATGATACTGAGGCAGAAGAACGAGCTGCTACCCTATATGCACCGAGAAGTGAATTAATAGATTGGAGAGGAGAATGA | 3288 | 0.4364 | MALPPQLQDEDTNIDVHTTRGAPIRYLPLDHLYSATAPCSGSSNVMSKKVKARKLNINNNNNNHFHNEIDNSNSDSEPPLDHHNNKKTTSSSLVLPKPPLLYVYTRRRRRKRSSSPTVSFYRSLLGRVDKESEDDSERRVPKKRKTGCNELEKLGVDLTSLGNLDGPRLRECRTQIGNSGIAGGGSSLENNLPKLLPESRTVKRWVALSTDNADPEAFVGLRCKVYWPMDLRSYTGYVKGYDMETKIHHIKYDDGDEENLILSNENVKCHVSRDEMKRLKLSYAKVRDSNFSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESFASNCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKLSFIEGLEEAKRYLSEQKLPLEMLELQKRCTVDDSNDVSGEDGGCTDSGEDCLHDKGTWAELNNIETFPYEVGDLQILSLGKIVEDSTSFGDGRSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESKVRPLFRVTVDGGEQFNGDTPSACWNQVYKRIKKLEKDDSEGSVAEDGVERGYESGSDMFGFSNPKVAKLIQGLSKSKVSSKKSICKLGSRRYNDLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHEHSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNPEPSGRGVCSKFFCTQQRLGTSLIDASNSILSIAEKYKYMRETFRKRLAFGKSGIHGFGIFAKHAYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDERIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE* | 1096 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g00293 | 1095 | SMART | fyrc_3 | 522 | 616 | IPR003889 | GO:0005634 | |
Rops8g00293 | 1095 | Pfam | F/Y-rich N-terminus | 461 | 511 | IPR003888 | GO:0005634 | |
Rops8g00293 | 1095 | MobiDBLite | consensus disorder prediction | 58 | 74 | - | - | |
Rops8g00293 | 1095 | SMART | PWWP_4 | 312 | 375 | IPR000313 | - | |
Rops8g00293 | 1095 | SMART | PHD_3 | 739 | 805 | IPR001965 | - | |
Rops8g00293 | 1095 | SMART | PHD_3 | 629 | 676 | IPR001965 | - | |
Rops8g00293 | 1095 | CDD | ePHD_ATX1_2_like | 690 | 804 | IPR041956 | - | |
Rops8g00293 | 1095 | SUPERFAMILY | Tudor/PWWP/MBT | 308 | 409 | - | - | |
Rops8g00293 | 1095 | SMART | fyrn_3 | 470 | 514 | IPR003888 | GO:0005634 | |
Rops8g00293 | 1095 | FunFam | Histone-lysine N-methyltransferase | 679 | 807 | - | - | |
Rops8g00293 | 1095 | MobiDBLite | consensus disorder prediction | 58 | 93 | - | - | |
Rops8g00293 | 1095 | Pfam | PWWP domain | 315 | 402 | IPR000313 | - | |
Rops8g00293 | 1095 | CDD | PHD_ATX1_2_like | 629 | 675 | IPR042010 | - | |
Rops8g00293 | 1095 | CDD | Tudor_Agenet_AtEML-like | 219 | 268 | - | - | |
Rops8g00293 | 1095 | ProSiteProfiles | FYR domain FYRC motif profile. | 518 | 604 | IPR003889 | GO:0005634 | |
Rops8g00293 | 1095 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 681 | 805 | IPR034732 | - | |
Rops8g00293 | 1095 | ProSiteProfiles | SET domain profile. | 931 | 1049 | IPR001214 | GO:0005515 | |
Rops8g00293 | 1095 | Pfam | F/Y rich C-terminus | 520 | 595 | IPR003889 | GO:0005634 | |
Rops8g00293 | 1095 | ProSiteProfiles | PWWP domain profile. | 314 | 377 | IPR000313 | - | |
Rops8g00293 | 1095 | Gene3D | - | 456 | 596 | - | - | |
Rops8g00293 | 1095 | ProSiteProfiles | Zinc finger PHD-type profile. | 627 | 678 | IPR019787 | - | |
Rops8g00293 | 1095 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 676 | 807 | IPR013083 | - | |
Rops8g00293 | 1095 | PANTHER | PHD FINGER PROTEINS | 48 | 1079 | - | - | |
Rops8g00293 | 1095 | ProSitePatterns | Zinc finger PHD-type signature. | 630 | 675 | IPR019786 | - | |
Rops8g00293 | 1095 | CDD | PWWP_AtATX1-like | 313 | 408 | - | - | |
Rops8g00293 | 1095 | SUPERFAMILY | FYVE/PHD zinc finger | 622 | 691 | IPR011011 | - | |
Rops8g00293 | 1095 | Pfam | PHD-finger | 642 | 676 | - | - | |
Rops8g00293 | 1095 | ProSiteProfiles | Post-SET domain profile. | 1055 | 1071 | IPR003616 | - | |
Rops8g00293 | 1095 | FunFam | Histone-lysine N-methyltransferase | 864 | 1088 | - | - | |
Rops8g00293 | 1095 | Pfam | SET domain | 942 | 1048 | IPR001214 | GO:0005515 | |
Rops8g00293 | 1095 | Gene3D | SET domain | 889 | 1083 | IPR046341 | - | |
Rops8g00293 | 1095 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 621 | 675 | IPR013083 | - | |
Rops8g00293 | 1095 | SUPERFAMILY | SET domain | 928 | 1068 | IPR046341 | - | |
Rops8g00293 | 1095 | CDD | SET_SETD1-like | 919 | 1067 | - | - | |
Rops8g00293 | 1095 | ProSiteProfiles | FYR domain FYRN motif profile. | 455 | 514 | IPR003888 | GO:0005634 | |
Rops8g00293 | 1095 | Gene3D | - | 214 | 269 | - | - | |
Rops8g00293 | 1095 | Gene3D | - | 302 | 413 | - | - | |
Rops8g00293 | 1095 | SMART | set_7 | 931 | 1055 | IPR001214 | GO:0005515 | |
Rops8g00293 | 1095 | Pfam | PHD-zinc-finger like domain | 683 | 804 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g00293 | Rops-Chr8 | 5732562 | 5749791 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g00293 | 630 | 775 | C2H2 Transcription Factor Family | AT3G14740 | 39.735 | 4.32e-27 | 112 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Rops8g00293 | zf-HC5HC2H_2 | 3.9e-33 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g00293 | - | - | gmx:100808923 | 1858.57 |