Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00276 ATGGCCACAACCACTCCAGCTAGGTCTTTTCTCCAAGTTGCTGCAACAGAGGAGTCTGCACCACCTCTCAGAGTCGTCCAAATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTGCTTTGGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTATCAGCTCGAGATGATGAGGTGTCTCAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAATCTACATTGCTTGGCTCCTTTCAGACAGCGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAACATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAGTTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTCGAGGAAATACCTATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGTCTGCAACTGTCAACCAGTTCATTAATGGAGAGAAATGTGGAATTTTTGACTGAATGCATGGATGACTTGTCCCTAGAGCAACAAAAGTTCCAATTCTACTATCGGAGCTTGTCTCGTCAGCAGGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGGCGGAGAACATGGCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAAGATCCTTCAAACCCCATTTTCAAGCCAATCCCAGAGCCATCACGGTTGGAGAGCTTCCTTATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTTTCTGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCATTGCATGAGGATTGA 1017 0.4444 MATTTPARSFLQVAATEESAPPLRVVQIEGLVILKIIKHCKDHSPALVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTAELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNVEFLTECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPIFKPIPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00276 338 SMART pad1_6 25 158 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops8g00276 338 Gene3D Cytidine Deaminase, domain 2 3 215 - -
Rops8g00276 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 17 322 - -
Rops8g00276 338 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 24 128 IPR000555 GO:0005515|GO:0008233|GO:0008237
Rops8g00276 338 FunFam Eukaryotic translation initiation factor 3 subunit H 5 214 - -
Rops8g00276 338 Pfam C-terminal region of eIF3h 145 337 IPR045810 -
Rops8g00276 338 MobiDBLite consensus disorder prediction 275 295 - -
Rops8g00276 338 CDD MPN_eIF3h 24 287 IPR027524 GO:0003743|GO:0005737|GO:0005852
Rops8g00276 338 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 21 338 IPR027524 GO:0003743|GO:0005737|GO:0005852
Rops8g00276 338 ProSiteProfiles MPN domain profile. 26 159 IPR037518 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00276 89 338 Eukaryotic Initiation Factors Gene Family AT1G10840 83.600 1.29e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00276 K03247 - gmx:100795273 642.499