Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00275 ATGCTCAGATCAGGAAGAGGAAGAAGAAGAAGAAGAATGACAAGTTTTCAGTTTCAGTTTAGAGTTTTAAGTTTGCTGATTTCAGTTTCCTATTTGCTGACATGCTTTGGAAACAACGACATGGCTGTTCAGTTGAATGATGATGTTCTTGGACTGATCGTGTTTAAATCAGACCTTCACGACCCTTCTTCTTATCTTGCTTCATGGAACGAAGATGATGTCAACCCTTGTTCATGGCAGTATGTGCAATGCAATCCTGAGAGTGGAAGAGTTTCAGAGGTCTCATTGGATGGCTTAGGATTATCTGGGAAGATAGGAAGAGGTCTTGAGAAGTTGCAGCATCTAACGGTATTGTCCCTTTCTCATAACAACTTGACTGGGACTATTAGTCCAGCTCTTAGTCTTTCTAATAGTCTTGAAAGGCTTAACCTTAGTCACAATGGTCTTTCTGGTCCCATACCTACTTCTTTTGTCAACATGAGTTCAATAAGGTTTCTTGATCTTTCTGAGAATTCATTCTCAGGAACAATCCCTGATAGTTTGTTTGAGAGCTGTTTTTCACTTCATCACCTTTCTTTAGCTTGGAATATGTTTGAAGGGCAAATTCCTAGCACAATATCTAGATGTTCTTCCTTGAATAGCCTTAATCTTTCCAATAATCATTTCAGTGGTAATGTGGACTTCAATGGGATTTGGTCATTGAACAGGATTAGGAATTTGGATCTATCCAACAATGCCTTATCTGGAAACTTACCTAATGGAATTTCAGCCTTACATAACTTGAAAGGGATCTTACTACAAAATAATCAGTTTTCAGGTCCATTACCCACTGATATTGGACTATGCCTGCATTTGAATAGGTTGGATTTTAGTAATAATCAGTTCAGTGGAGAACTACCAGTGTCAATGGGGAGACTTAATTCTTTGAGCTATTTCAAAGCATCAAATAATGTTTTCAACAGTGAATTGCCTCAGTGGATTGGTAAAATGATTAGTCTGGAATACCTTGAGCTCTCAAACAATCAGTTCTATGGATTCATCCCACAGTCCATAGGGGAACTGAGATCACTGACTTATCTGAGCATTTCAAACAACAAGCTTGTTGGAAATATTCCTTTGTCATTGGCTTCCTGCACAAAGTTATCTGTGATCCAGCTCAGAGGTAATGGTCTCAATGGTACCATACCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGATTTTTCCCACAATGATCTGATAGGCTCAATTCCAGGAGGCTCAAGCAGGCTCTTAGAAACACTTACCAATTTGGATCTTTCAGAGAATCATCTCCAAGGGAATATCCCTGCTGAAATGGGCCTTCTTTCAAAACTAAGATACTTGAATTTGTCTTGGAATGATCTTCATTCTCAGATGCCTCCAGAATTTGGTCTCCTTCAGAATCTAACAGTTTTAGATCTTCGTAACAGCGCCTTGTATGGTTCTGTTCCAGCTGATATATGTGATTCAGGCAATTTGGCAGTCCTTCAACTGGATGGAAATTCATTGAAGGGGTCTATTCCAGAAGAGATTGGGAACTGTACATCGCTTTACTTATTGAGTTTGTCTCACAATAATTTGAGTGGTTCAATCCCAAAGTCCATGTCAAAGCTAAACAAGCTCAAAATCCTCAAGTTGGAATTCAATGACCTGAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAAAATCTTCTTGCAGTGAATATATCATATAACAGGCTCACAGGCAGGCTTCCTACTAGTACTATATTTCAAAACTTGGACAAAAGTGCCTTGGAAGGAAACCTTGGTCTTTGCTCACCCTTGCTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCACTAGTGCTTGACCCAAATGCCTATAACAACCAAATGGGTTCTCAAAGGCAAAGAAATGAATCAACTGAGTCTAGCCCAATTCATCACCACAGGTTCCTTAGTGTTTCTGCTCTTGTAGCAATTTCTGCATCCTTTGTAATTGTATTAGGAGTTATTGCTGTTAGCCTGCTAAATGTTTCTGTGAGGAGAAGGCTATCATTTGTGGATAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCTAGATCAGGAAGTCCAGCCACAGGAAAGCTTATTCTGTTTGATTCCCAGTCCTCACCTGATTGGATCAGCAATCCAGAATCCTTGCTCAACAAGGCATCTGAGATTGGAGGAGGAGTCTTTGGAACAGTTTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTAGCAATCAAGAAGCTTATCACCTCAAACATACTCCAATTTCATGAAGACTTTGATAGGGAAGTTAGAATCCTAGGGAAAGCAAGGCACCCGAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAACTACAGCTTTTAGTATCTGAATATGCACCAACTGGTAACTTGCAATCCAAGCTACATGAAAGGCTTCCTTCAAGTACTCCACTTTCTTGGCCTATTAGATTCAAAATCTTGCTTGGAACAGCAAAGGGACTTGCACATTTGCACCATTCATTCCGTCCACCAATCATTCACTACAACATAAAGCCAAGCAACATTTTACTTGATGAAAATTACAACCCCAAGATCTCAGATTTTGGGTTAGCTAGGCTTCTTACAAAGCTGGACAGGCATGTGATGAGCAATAGGTTTCAAAGTGCATTAGGATATGTGGCACCAGAATTAGCATGTCAAAGCTTAAGGGTCAATGAGAAATGTGATGTATATGGTTTTGGGGTGATGATCCTTGAGCTAGTCACAGGAAGGAGGCCAGTGGAGTATGGTGAAGACAATGTGCTTATACTGAATGACCATGTAAGGGTGTTGCTTGAACATGGAAATGCATTGGATTGTGTTGATCCAAGCATAAGTGAGTTCCCAGAAGATGAAGTATTGCCAGTTCTGAAGCTGGCTATGGTTTGCACTTCTCAAATACCTTCTGGCAGGCCTACTATGGCTGAAGTGGTGCAAATATTGCAAGTCATCAAAACCCCAGTTCCTCAAAGGATGGAAGTGTTTTGA 3060 0.4046 MLRSGRGRRRRRMTSFQFQFRVLSLLISVSYLLTCFGNNDMAVQLNDDVLGLIVFKSDLHDPSSYLASWNEDDVNPCSWQYVQCNPESGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLTGTISPALSLSNSLERLNLSHNGLSGPIPTSFVNMSSIRFLDLSENSFSGTIPDSLFESCFSLHHLSLAWNMFEGQIPSTISRCSSLNSLNLSNNHFSGNVDFNGIWSLNRIRNLDLSNNALSGNLPNGISALHNLKGILLQNNQFSGPLPTDIGLCLHLNRLDFSNNQFSGELPVSMGRLNSLSYFKASNNVFNSELPQWIGKMISLEYLELSNNQFYGFIPQSIGELRSLTYLSISNNKLVGNIPLSLASCTKLSVIQLRGNGLNGTIPEGLFGLGLEEIDFSHNDLIGSIPGGSSRLLETLTNLDLSENHLQGNIPAEMGLLSKLRYLNLSWNDLHSQMPPEFGLLQNLTVLDLRNSALYGSVPADICDSGNLAVLQLDGNSLKGSIPEEIGNCTSLYLLSLSHNNLSGSIPKSMSKLNKLKILKLEFNDLSGEIPMELGMLQNLLAVNISYNRLTGRLPTSTIFQNLDKSALEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQMGSQRQRNESTESSPIHHHRFLSVSALVAISASFVIVLGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGSPATGKLILFDSQSSPDWISNPESLLNKASEIGGGVFGTVYKVPLGSQGRMVAIKKLITSNILQFHEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVSEYAPTGNLQSKLHERLPSSTPLSWPIRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENYNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNALDCVDPSISEFPEDEVLPVLKLAMVCTSQIPSGRPTMAEVVQILQVIKTPVPQRMEVF* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00275 1019 SUPERFAMILY Protein kinase-like (PK-like) 735 1013 IPR011009 -
Rops8g00275 1019 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 45 1005 - -
Rops8g00275 1019 SUPERFAMILY L domain-like 322 599 - -
Rops8g00275 1019 ProSiteProfiles Protein kinase domain profile. 732 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00275 1019 SMART LRR_typ_2 570 595 IPR003591 -
Rops8g00275 1019 SMART LRR_typ_2 330 354 IPR003591 -
Rops8g00275 1019 SMART LRR_typ_2 450 473 IPR003591 -
Rops8g00275 1019 SMART LRR_typ_2 474 498 IPR003591 -
Rops8g00275 1019 SMART LRR_typ_2 160 184 IPR003591 -
Rops8g00275 1019 SMART LRR_typ_2 234 258 IPR003591 -
Rops8g00275 1019 SMART LRR_typ_2 112 136 IPR003591 -
Rops8g00275 1019 Gene3D Ribonuclease Inhibitor 229 322 IPR032675 -
Rops8g00275 1019 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Rops8g00275 1019 CDD STKc_IRAK 738 1006 - -
Rops8g00275 1019 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 206 300 - -
Rops8g00275 1019 Gene3D Ribonuclease Inhibitor 49 158 IPR032675 -
Rops8g00275 1019 FunFam Inactive leucine-rich repeat receptor-like protein kinase 327 619 - -
Rops8g00275 1019 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 726 809 - -
Rops8g00275 1019 Gene3D Ribonuclease Inhibitor 323 622 IPR032675 -
Rops8g00275 1019 Gene3D Transferase(Phosphotransferase) domain 1 814 1016 - -
Rops8g00275 1019 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 810 1014 - -
Rops8g00275 1019 ProSitePatterns Protein kinases ATP-binding region signature. 738 762 IPR017441 GO:0005524
Rops8g00275 1019 ProSiteProfiles Leucine-rich repeat profile. 114 136 IPR001611 GO:0005515
Rops8g00275 1019 Pfam Protein kinase domain 734 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00275 1019 Gene3D Phosphorylase Kinase; domain 1 732 813 - -
Rops8g00275 1019 Gene3D Ribonuclease Inhibitor 159 228 IPR032675 -
Rops8g00275 1019 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 45 205 - -
Rops8g00275 1019 Pfam Leucine rich repeat 500 559 IPR001611 GO:0005515
Rops8g00275 1019 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Rops8g00275 1019 Pfam Leucine rich repeat 404 463 IPR001611 GO:0005515
Rops8g00275 1019 SUPERFAMILY L domain-like 62 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00275 Rops-Chr8 5449813 5453270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00275 7 1016 Receptor kinase-like Gene Family AT3G28040 64.055 0.0 1261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Rops8g00275 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00275 - - gmx:100813764 1730.3