Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00268 ATGGATTCTTCTTCTTCTTCTTCTTTCTCTTCTTCATTGACCTTTCACTTCAATCGCTTCAGAACCTTCGCGAACATGTTTCTCTCTCAATACGAACCTCTCGCTCTGGTTCTCGCTCCTCTCCTCTCTCTCCTTCTCGCTCACGCTCTTCTCTCCTTCTTCCATCTCATCCATGAGAAAGGACTCAAAGCTACTCTCATAGGGTTCTTCATGAACTCTATCAAATTGATCCCTGGAGTGAAGAGTTATATAGACGCCGAAAAACGCAAGGTTGTGGATAAGTTGCAGTCTGGTAGTAAATCTAAAAGAGAAGTTTGGAAAACAGAGTTGCCTAGCACGGGATTAGGGTCATCTGTCCTTGAGAAAATGAGAGAAGAGAAAAGAAATGATGCGGTTTGGCGAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCGGATGGACATTTTTCTCTGATAAATGAGGCATGCTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAAGACTTCTGGAGGACAAATATGTGGCAACATGACATCAGGAGGGACTGAAAGTATATTATTAGCTGTTAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCCGAAATGATTATTGCTGAGTCTGCACACTCAGCATATGACAAGGCTGCGCAGTATTTTAATATCAAACTATGCCGTGTTCCAGTTGACAAAAAATTTCAAGCAGATGTGAAAGCAATTCGACGTCATATTAATAAAAACACCATTTTGATTGTTGGATCCGCTCCTGGTTTTCCACATGGAATAATTGACCCCATCGAAGAACTTGGTCATCTAGCATCAAGCTTTGGTATTTGTTTCCACGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTGGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTGGATGTGCATAAATACGGGTTAGCTCCCAAAGGAACAAGTGTAGTTCTATACAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACTGAGTGGACTGGTGGCTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGAAGGTTACTTGGCAAATACAAAAGCACTTATGGAAGGAACAAAAAGAATACAGAAAGGCATAGAGGAGATTGCCGAGTTGTTTATCATTGGAAGACCCGATATGACAATAGTGGCTTTTGGATCTAATGTTCTGGATATATTTGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAGCATGTACCAGTTGTTGAAGACTTTCTCAGGGGTTTAAAGGATTCTGTGAACACTGTGAAAGAAAATCCTGGTCCAGTGAGTGGTGGGCTAGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTACAGGAATTGCTGGTTGATTATATGGACGGTACTTGCTAG 1647 0.4256 MDSSSSSSFSSSLTFHFNRFRTFANMFLSQYEPLALVLAPLLSLLLAHALLSFFHLIHEKGLKATLIGFFMNSIKLIPGVKSYIDAEKRKVVDKLQSGSKSKREVWKTELPSTGLGSSVLEKMREEKRNDAVWRGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFQSVARFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIAESAHSAYDKAAQYFNIKLCRVPVDKKFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWTGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLANTKALMEGTKRIQKGIEEIAELFIIGRPDMTIVAFGSNVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPVVEDFLRGLKDSVNTVKENPGPVSGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00268 548 Gene3D - 145 412 IPR015421 GO:0003824
Rops8g00268 548 PANTHER - 50 548 - -
Rops8g00268 548 FunFam Sphingosine-1-phosphate lyase 1 509 547 - -
Rops8g00268 548 Gene3D Aspartate Aminotransferase, domain 1 117 511 IPR015422 GO:0003824
Rops8g00268 548 Gene3D - 108 545 - -
Rops8g00268 548 FunFam sphingosine-1-phosphate lyase 1 148 412 - -
Rops8g00268 548 Pfam Pyridoxal-dependent decarboxylase conserved domain 165 453 IPR002129 GO:0016830|GO:0019752|GO:0030170
Rops8g00268 548 SUPERFAMILY PLP-dependent transferases 90 510 IPR015424 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00268 164 508 Calmodulin-binding Proteins AT3G17760 26.230 4.86e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00268 K01634 - gmx:100794395 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00268 8 5396759 5403413 Rops8g00268 8 5396759 5403413 ECH