Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00254 ATGGAGATAACCTACGCATCGCCAAGTTTCTCCGACCTCCCCCCCGCCGTTCCTTCCTCCATGCCGTCGTCGGCGACCGGTGCTCGTCCGGTCAGGGTGATTCCTCTGCAGCATCCGACCGTTACGACGTCGTCGTCGCCGTCGCCGAATGTCGCGTTTTCGAGGTGGTTGTCGAAGCTCCGGCGAATGACGTGGCTCGAATGGATCGAGTTCTTCCTTCCTTGTTGCCGTTGGATTCGCATCTACAAATGGCGCGAGTATTTTCAGGTCGATCTCATGGCCGGTATCACCGTCGGAGTTATGCTTGTTCCTCAGTCTATGTCATATGCAAAATTAGCTGGGCTTCAGCCAATATATGGACTCTACTCTGGTTTTGTGCCCATATTTGTTTATGCCATATTTGGTTCTTCTCGCCAGCTGGCTGTTGGCCCAGTAGCATTGGTTTCTCTCTTGGTCGGTAATGTGCTAAGTAGCATAGCTGATTCATCCAGTGAACTATACACAGAGTTGGCGATATTACTGTCTCTTATGGTTGGGATACTGGAGTGCATAATGGGACTCTTGAGGCTTGGATGGCTAATTCGTTTCATTAGCCATTCGGTGATCTCTGGCTTTACAACTGCTTCAGCTATTGTGATTGGTTTATCTCAAGCAAAATACTTCTTGGGGTATGATATAGACAAAAGTAGCAAGATCATACCAGTGGTTAAAAGCATAATAGCTGGAGCAGACAAGTTTTCATGGCCCCCTTTTGTGATGGGATCAGTTATGCTGGCAATACTACTTGTCATGAAGCACCTGGGAAAATCGAGGAAGTACTTGCGATTCTTGAGAGCTGCAGGTCCTCTTACAGCAGTAGTTCTGGGAACAGTTTTTGTCAAAATATTTCATCCACCATCAATTTCTTTGGTGGGAGATATACCTCAGGGCCTACCAAAATTTTCTGTTCCCAAAGCTTTTGAGTATGCAGCGTCCTTAATTCCAACTGCTCTTCTTATAACTGGCGTGGCTATACTGGAATCAGTGGGAATTGCCAAGGCATTAGCAGCTAAGAATGGGTATGAGTTGGATTCTAATCAAGAGTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTCTTTTCAGCATATCCCACTACAGGATCCTTTTCAAGATCAGCTGTTAATCATGAAAGTGGTGCAAAATCTGGAGTATCTGGGATAGTTTCAGGGATTATAATGACCTGTGCTCTTTTGTTTCTAACGCCATTATTTGAGTACATACCTCAGTGTGCTCTTGCTGCCATTGTGATCTCTGCTGTGATGGGTCTGGTAGATTATGATGAGGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGTGTACTTGTTGGGGTTGGGGTTTCACTTGCTTTTGTCATATATGAGTCAGCAAATCCACATATTGCTGTTTTGGGTCGTTTGCCGGGGACAACTGTTTATAGAAATGTTAAACAATATCCTGAAGCATATACATACAATGGAATTGTAATTGTTCGTGTTGATGCTCCTATTTATTTTGCAAACACAAGTTACATAAAGGACAGGTTGCGGGAATATGAAGTTGATGTTGATAGTTCTAAAAGACGTGGACCTGAGGTCGAAAGAATTTATTGTGTGATTCTAGAGATGGCGCCTGTGACCTACATTGACTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAGTTACGGGACATTCAGATTGCAATATCCAATCCAAGCCCAGAAGTTCTGCTTACTTTGTCTAGATCCGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGCTTGCAGCATGTTCAAAGCTTGAAAGTGGGATCCAACATTTCACAAGCACCACCCTCTTTATCAGAAGACAAGCCAAGTTTCTTTGCACGGTTATCGAAGCTGAGAGGGGAGAACCTTTCAACTACCGACTTGGAGTCTGGTAGTGGCAGGCCTTCAATCTCCAAGGACGGAGATTCCCAGTTGGAGCCATTGTTGCCAAAAGAACATTGA 2115 0.443 MEITYASPSFSDLPPAVPSSMPSSATGARPVRVIPLQHPTVTTSSSPSPNVAFSRWLSKLRRMTWLEWIEFFLPCCRWIRIYKWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLQPIYGLYSGFVPIFVYAIFGSSRQLAVGPVALVSLLVGNVLSSIADSSSELYTELAILLSLMVGILECIMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQAKYFLGYDIDKSSKIIPVVKSIIAGADKFSWPPFVMGSVMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTVFVKIFHPPSISLVGDIPQGLPKFSVPKAFEYAASLIPTALLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVSGIIMTCALLFLTPLFEYIPQCALAAIVISAVMGLVDYDEAIFLWRVDKKDFLLWTITSTTTLFLGIEIGVLVGVGVSLAFVIYESANPHIAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRVDAPIYFANTSYIKDRLREYEVDVDSSKRRGPEVERIYCVILEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPSPEVLLTLSRSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKVGSNISQAPPSLSEDKPSFFARLSKLRGENLSTTDLESGSGRPSISKDGDSQLEPLLPKEH* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00254 704 FunFam Sulfate transporter 31 491 638 - -
Rops8g00254 704 Pfam Sulfate permease family 88 461 IPR011547 GO:0016020
Rops8g00254 704 ProSitePatterns SLC26A transporters signature. 117 138 IPR018045 GO:0008271|GO:0008272
Rops8g00254 704 PANTHER SULFATE TRANSPORTER 53 638 IPR001902 GO:0016020|GO:0055085
Rops8g00254 704 NCBIfam sulfate permease 74 631 IPR001902 GO:0016020|GO:0055085
Rops8g00254 704 ProSiteProfiles STAS domain profile. 511 635 IPR002645 -
Rops8g00254 704 Gene3D STAS domain 491 639 IPR036513 -
Rops8g00254 704 MobiDBLite consensus disorder prediction 674 704 - -
Rops8g00254 704 SUPERFAMILY SpoIIaa-like 513 635 IPR036513 -
Rops8g00254 704 Pfam STAS domain 512 631 IPR002645 -
Rops8g00254 704 CDD STAS_SulP_like_sulfate_transporter 512 628 - -
Rops8g00254 704 MobiDBLite consensus disorder prediction 674 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00254 Rops-Chr8 5132140 5141366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00254 29 665 Inorganic Solute Cotransporters AT5G13550 75.039 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00254 K18059 - gmx:100794754 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00254 8 5132140 5141366 Rops8g00254 8 5132140 5141366 ECH