Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00251 ATGGTGGGCAACGACGATGCTCGCGCTCCCTGCCACCGGAAAATGTTCTGGCGTTCAGCCTCTTGGTCCTCCGCCCGTACTGCCGGCGCCGGCAACGCTTCCGGCGAGTCAGATAAGGATTTCACCGATCCCGATTCCGGCGCTGAGAACGTGAATAGGAGGTTCCCTCCGCCGCCATTGACACCACGATCGCAGCAAAATTGCAAGGCGCGGTCGTGCTTGCCGCCGCTTCAGCCACTCTCCATTGCTCGCCGGAGTTTGGACGAGTGGCCGAAGGCGAGTTCTGATGATATCGGAGAATGGCCGCAGCCACCTATAACCCCTGGTGGGAGAGGAGGTAACAATAACAACAATAATGGTGAAAGGTTGAAACTTGATTTGTCTTCTATTCAGCAGAACAACCCTGATCATAAGAACAATGGTGGGCTTGTGAAGAGGGACAAGATTGCATTTTTTGATAAGGAATGTTCTAAAGTTGCTGAGCATGTTTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGATATTTTGAAAAAGAATGGGATCACTCATGTTTTGAATTGTGTTGGTTTTGTGTGTCCTGAGTACTTCAAAGCTGATTTTGTGTATAGGACTTTGTGGTTGCAGGATAGTCCTTCTGAGGATATCACTAGTATTTTGTATGATGTGTTTGATTACTTTGAGGATGTTAGGGAACAGGGTGGGAGAGTGTTTGTGCATTGTTGTCAAGGGGTGTCTAGGTCTACTTCTTTGGTTATTGCTTACCTCATGTGGAGGGAAGGGCAGAGCTTTGAGGATGCTTTTGAGCTTGTGAAGGCTGCAAGAGGTATTGCTGATCCAAACATGGGTTTTGCTTGTCAGTTGTTGCAGTGCCAGAAAAGGGTCCATGCATTCCCTCTTAGCCCTAGCTCTTTGCTGAGAATGTATAGAATTGCACCCCACTCGCCGTATGATCCTTTGCATCTTGTCCCCAAAATGTTGACGGATCCATCTTCGAATGCTCTGGACTCCAGGGGTGCATTTATAGTGCAGATTCCTTCTGCAATATATGTTTGGATTGGTAAGCATTGTGAGGTCATCATGGAAAGGGATGCCAGAGGGGCTGTGGGTCAGATTGTCCGCTATGAGAGAGTGCAAGGACCTATTGTAATGATTAAGGAAGGTGAGGAACCAGCTTATTTTTGGGAGGCTTTTTCAAAATTTTTGCCTTTGAAGGACACATCTAGCAATAGAGTAGAAAGTAGCAGATCAAGTACTAAAATCTGGCCTGGTGAGAGGAAAGTGGACTCGTATGATGTTGATTTCGAAGTTTTCAAGAAAGCTATCACGGGAGGTTTTGTGCCTCCATTTGCATCATCAGAGGATGAACATGAAACCCATCTTCCTGCAAGAGAAAGTTGTTGGAGTGTTTTAAGGCGTAAAGTTTCCTCTGCTAATATGAAGGAGTTTGTGTCAGCCCCTAAGTTATCCTTTCCGCGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAATTCATCTCTATCTTCGTCACTGTCATCGTCATCATCTCTGCCACTATCCTCTTCACCCTCTCATGTCTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCAAAGATTTTGTCAGATTTGTCCCCAGATTCTTCCACTTTAGTTTTGAGTTCTATTCCAGTATCTTCACCTTTGTCTAACTTCTCTAATTTGTCTCTCTCGTCAAATTTTACTTCTCAACCAGCGTCTAACAGTACAGATATCCGTGGTGTCAAGTTATCACTTCCATGTTCTCAGTCAGCCTCTTTACCATTGAAAAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAGTCTTTGAAGTTGCCACTAATGAATGATAAGACACAAGTAATAGATAGACCATCAACTCATCATGCTAGTCGAGAATATGGGGTTCTTGTCAATGGCAACTTTAGCTGTTCGCAACAATCAGATAGTATAGATTACATTTTTGAGTCCAACAACCTTGTCAAGGATGGAAGTGCAAATCCAATTCAACAGTGTGAATTGGCATTATGCCTGGGCATTGTTGATAATGTGGACTTCAAGGAATCTTCACTTCTCAGGAACCGTGTTGAGCCTTCGATGGATAGTTCCTCAAGAGAAGACTTAAAGTCTACATCATCAAAGGGAACTAATGAGAGTGGCTTGTTGCAATGTAGTATGGCACAGACTTTAGCATATCACTGGCCCAGTTTAGAAAGGATTGAGACATTTGGTGCAAGTCATTTAGATTCTAAAGCTGCTTTTGTTGTATTCTCTCCAAGTAATGTACATGCAGGAAATGTTTTATATTTATGGGTAGGGAGGTCATTCAAGTGTGATACCTCACAGGTTCGGTTAGATAGTGATAGACAGTCTGATTTTCTTGGAGCAGTTGACTGGAATCAAATTGGTTGTGATCTCCTTGCTCGGTTTAGTTTGCCAAAGAATACACTGATCAAGATTGTTAAAGAGAATGAAGAACCACGAGAGTTCCTTGCTTTGCTGAATTCATTGTAG 2556 0.437 MVGNDDARAPCHRKMFWRSASWSSARTAGAGNASGESDKDFTDPDSGAENVNRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPITPGGRGGNNNNNNGERLKLDLSSIQQNNPDHKNNGGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKKNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFELVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSNALDSRGAFIVQIPSAIYVWIGKHCEVIMERDARGAVGQIVRYERVQGPIVMIKEGEEPAYFWEAFSKFLPLKDTSSNRVESSRSSTKIWPGERKVDSYDVDFEVFKKAITGGFVPPFASSEDEHETHLPARESCWSVLRRKVSSANMKEFVSAPKLSFPRVYSDSMLCIHTSANSSLSSSLSSSSSLPLSSSPSHVSPDSISSDSSTHSKILSDLSPDSSTLVLSSIPVSSPLSNFSNLSLSSNFTSQPASNSTDIRGVKLSLPCSQSASLPLKKPSTSLAERRGSLSKSLKLPLMNDKTQVIDRPSTHHASREYGVLVNGNFSCSQQSDSIDYIFESNNLVKDGSANPIQQCELALCLGIVDNVDFKESSLLRNRVEPSMDSSSREDLKSTSSKGTNESGLLQCSMAQTLAYHWPSLERIETFGASHLDSKAAFVVFSPSNVHAGNVLYLWVGRSFKCDTSQVRLDSDRQSDFLGAVDWNQIGCDLLARFSLPKNTLIKIVKENEEPREFLALLNSL* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00251 851 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 214 275 IPR000387 GO:0016311|GO:0016791
Rops8g00251 851 Pfam Dual specificity phosphatase, catalytic domain 163 293 IPR000340 GO:0008138|GO:0016311
Rops8g00251 851 SMART VILL_6 304 401 IPR007122 GO:0051015
Rops8g00251 851 ProSitePatterns Tyrosine specific protein phosphatases active site. 239 249 IPR016130 GO:0016311|GO:0016791
Rops8g00251 851 MobiDBLite consensus disorder prediction 521 545 - -
Rops8g00251 851 Gene3D Severin 306 403 IPR029006 -
Rops8g00251 851 SUPERFAMILY Actin depolymerizing proteins 754 850 - -
Rops8g00251 851 CDD DSP 156 290 - -
Rops8g00251 851 MobiDBLite consensus disorder prediction 88 122 - -
Rops8g00251 851 ProSiteProfiles Dual specificity protein phosphatase domain profile. 155 297 IPR020422 GO:0006470|GO:0008138
Rops8g00251 851 SUPERFAMILY Actin depolymerizing proteins 302 407 - -
Rops8g00251 851 SMART dsp_5 155 294 IPR020422 GO:0006470|GO:0008138
Rops8g00251 851 PANTHER MKPA PROTEIN 11 848 - -
Rops8g00251 851 Gene3D Protein tyrosine phosphatase superfamily 130 297 IPR029021 -
Rops8g00251 851 MobiDBLite consensus disorder prediction 709 726 - -
Rops8g00251 851 MobiDBLite consensus disorder prediction 20 73 - -
Rops8g00251 851 MobiDBLite consensus disorder prediction 709 733 - -
Rops8g00251 851 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 149 296 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00251 Rops-Chr8 5067696 5073072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00251 2 191 Protein tyrosine phosphatase (PTP) family AT3G55270 61.579 2.77e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00251 - - vum:124838930 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00251 8 5067696 5073072 Rops8g00251 8 5067696 5073072 ECH