Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00247 ATGATGATATCGAGAGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAACCGCTAACGCCGGTTTCGGAGGTTTCGGAACCGCCGGAGTCACCGTCGCCGTACCTTGACCCCGGCGCCGAGACCTCCTCGGGGCAACAGGTGGAGGTTGAGGAGGATATGGAGGAAGCAGAGGAAATCGAGCCGCCACCGGCTGCGGTTCCTTTCTCGCAGCTCTTCGCATGCGCAGACCGGTTCGATTGGTTTCTCATGGCCGTCGGTTCCATCGCTGCTGCGGCTCACGGTACCGCGCTCGTTGTTTACTTGCACTACTTCGCGAAGATCATCCATGTGCTGCGGATGGAGCATGTCACGTCGCAGGAGCGGTTTGATAGGTTCTCTGAGCTTGCTTTAACAATTGTTTATATTGCTGTGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAACGACAGACTGCTGTCATCAGGTCCAAATATGTTCAAGTATTACTAAATCAAGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATCCAGTCTGCTCTAAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATTGCTTTGTTAACATTAGGCACAGGTCCTTTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTCCATAGGCTTGCGGAGAACATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTACGTAAGGACATTGTATGCATTTACAAATGAAACATTGAACAAGTACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTCGGAAGGTTCTTGGTTATTCACGGAAAAGCGCATGGTGGTGAAATTATAGCAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCGACGAATTTCTACTCATTTGATCAAGGGCGAATAGCAGCTTACAGACTATTTGAGATGATAAGCCGATCATCCTCATCTGTTAACCATGATGGCACTGCCCCTGGTTCTGTGCAAGGGAATATAGAGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACCGTACCTTCTAAGAAAACTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGCGAAAACATCAAGAATTTGAAATTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAATATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTAGAGAAAGGTTACAACACACAGGTTGGTAGGGCTGGTCTAACATTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGCGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGAGGCTCTGGATCTGCTTATGCTGGGACGCTCAACAATAATAATTGCTCGAAGACTTAGTCTCATAAAGAATGCTGATTATATAGCTGTTATGGAGGAAGGGCAACTTGTTGAAATGGGAACTCATGATGAATTATTGACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGCGAAGAGGCAGCAAAACTTCCCAAGAGAATGCCTGTTCGAAACTACAAGGAGACTGCAGCATTCCAAATTGAGAAGGATTCTTCAGCCAGTCATAGCTTCCAAGAGCCATCATCCCCTAAAATAATGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCCCGACCTCTAGATGGCATCTTTAACTTGCAAGAATCACCTAAAAGCCGGAGCCCCCCACCTGAGAAGATGCTGGAAAATGGTCAGGCTTTGTACGCAGCTGATAAGGAGCCAGCAATGAGAAGGCAGGATAGTTTTGAAATGAGACTGCCGGAGTTACCCAAGATTGATGTACAGTCTGGGCATCGACAAAAATTAAATGATTCTGACCCAGAATCCCCTGTTTCTCCTCTTTTAACGTCTGATCCTAAAAATGAACGCTCTCATTCTCAGACTTTTAGTAGACCACATAGTCATTCTGATGATGTTTCAGTTACAATGAGAGAAAAGAAGGATGCACAGCATCGAAAACCACCATCACTTCAGAAGCTGGCTGAGCTTAGTTTGGCTGAGTGGCTTTATGCTGTATTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATCGGCCTTGTGGTGACAGAGTACTATAACATTGATAATCATCATCACTTGCAACGGGAGATTGACAAGTGGTGCTTGATCATAGCCTGCATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACCGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTAGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCTGCTTTTAGCAACCGGCTTTCCATATTTATTCAGGACAGTGCTGCTGTTATTGTTGGTCTTCTCATTGGTGCTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCGATTCTCTGTGTTTCTGCAGTTGCCCAGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAACATATACACTGTTGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCTATTGGATTTGCATTTGGCTTTTCCCAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCAATATGTGTTAAAAATGGTTACATGGATCCACCTACTGCACTCAAGGAGTACATGGTTTTCTCATTTGCAACATTTGCACTAGTGGAGCCTTTTGGATTGGCTCCATACATACTTAAACGACGAAAATCTCTCATATCAGTGTTTGAAATTATAGACCGAGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTCCATTACCCATCTCGTCCAGAAGTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCAGGCCAAGTTTTACTGGATGGGAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCCATTATTTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCAGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGCTGAAAAATGCACCTATCTTATTGTTGGATGAAGCAAGTTCATCAATTGAATCCGAGTCAAGCCGAGTGGTACAAGAGGCTCTCGACACACTAATAATGGGAAACAAGACCACTATTTTAATAGCACACAGGGCTTCAATGATGAGACATGTGGACAATATTGTAGTGCTTAATGGAGGAAGAATAGTGGAGGAGGGCAGTCATGATTCATTGGTGGCAAAGAGTGGTCTGTATGTTCGATTGATGCAACCTCATTTTGGTAAGGCTTTGCGTCACCATCGGCTTGTTTAG 4206 0.4308 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSSGQQVEVEEDMEEAEEIEPPPAAVPFSQLFACADRFDWFLMAVGSIAAAAHGTALVVYLHYFAKIIHVLRMEHVTSQERFDRFSELALTIVYIAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALLTLGTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLNKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIIAALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTAPGSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLEKGYNTQVGRAGLTLTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSASHSFQEPSSPKIMKSPSLQRISNVSRPLDGIFNLQESPKSRSPPPEKMLENGQALYAADKEPAMRRQDSFEMRLPELPKIDVQSGHRQKLNDSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDVSVTMREKKDAQHRKPPSLQKLAELSLAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTEYYNIDNHHHLQREIDKWCLIIACMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPILCVSAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICVKNGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFHYPSRPEVLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRASMMRHVDNIVVLNGGRIVEEGSHDSLVAKSGLYVRLMQPHFGKALRHHRLV* 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00247 1401 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 380 - -
Rops8g00247 1401 Gene3D - 395 642 IPR027417 -
Rops8g00247 1401 Gene3D ABC transporter type 1, transmembrane domain 70 658 IPR036640 GO:0005524|GO:0016020
Rops8g00247 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 639 IPR027417 -
Rops8g00247 1401 FunFam ABC transporter B family member 6 769 997 - -
Rops8g00247 1401 SUPERFAMILY ABC transporter transmembrane region 816 1137 IPR036640 GO:0005524|GO:0016020
Rops8g00247 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1141 1388 IPR027417 -
Rops8g00247 1401 Pfam ABC transporter 1170 1318 IPR003439 GO:0005524
Rops8g00247 1401 MobiDBLite consensus disorder prediction 763 780 - -
Rops8g00247 1401 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g00247 1401 SMART AAA_5 432 611 IPR003593 GO:0016887
Rops8g00247 1401 SMART AAA_5 1179 1366 IPR003593 GO:0016887
Rops8g00247 1401 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 405 640 IPR003439 GO:0005524
Rops8g00247 1401 MobiDBLite consensus disorder prediction 781 812 - -
Rops8g00247 1401 Pfam ABC transporter transmembrane region 834 1098 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g00247 1401 Pfam ABC transporter transmembrane region 86 355 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g00247 1401 Coils Coil 251 271 - -
Rops8g00247 1401 Gene3D ABC transporter type 1, transmembrane domain 768 993 IPR036640 GO:0005524|GO:0016020
Rops8g00247 1401 Gene3D ABC transporter type 1, transmembrane domain 999 1149 IPR036640 GO:0005524|GO:0016020
Rops8g00247 1401 MobiDBLite consensus disorder prediction 665 688 - -
Rops8g00247 1401 Pfam ABC transporter 426 570 IPR003439 GO:0005524
Rops8g00247 1401 CDD ABC_6TM_Pgp_ABCB1_D2_like 820 1135 - -
Rops8g00247 1401 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 829 1121 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g00247 1401 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1152 1389 IPR003439 GO:0005524
Rops8g00247 1401 MobiDBLite consensus disorder prediction 745 812 - -
Rops8g00247 1401 MobiDBLite consensus disorder prediction 13 50 - -
Rops8g00247 1401 FunFam ABC transporter B family member 6 999 1149 - -
Rops8g00247 1401 FunFam ABC transporter B family member 20 395 642 - -
Rops8g00247 1401 MobiDBLite consensus disorder prediction 745 762 - -
Rops8g00247 1401 PANTHER ABC TRANSPORTER B FAMILY 48 841 IPR039421 -
Rops8g00247 1401 Gene3D - 1150 1388 IPR027417 -
Rops8g00247 1401 FunFam ABC transporter B family member 20 70 407 - -
Rops8g00247 1401 SUPERFAMILY ABC transporter transmembrane region 71 380 IPR036640 GO:0005524|GO:0016020
Rops8g00247 1401 FunFam ABC transporter B family member 20 1142 1391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00247 Rops-Chr8 5034321 5047062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00247 59 694 Calmodulin-binding Proteins AT2G36910 42.747 2.51e-164 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00247 K05658 - gmx:100789116 2520.73