Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00246 ATGGGTGGCAATGGTGAAGATGGAGCTTGGATTAGCACTCGGCATTGAATTGCAATTGGGTCTCCTGGAGAGGCTAGCCAACCTGATGCAATTAGAGCAGCATTTGCAGAATTCTTCTCCATGATCATTTTTGTTTTTGCTGGACAAGGGTCTGGCATGGCTTACAGCAAACTAACCAACAATGGACCTGCAACACCTGCTGGTGTCATAGCTGCATCACTATCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGCAGCAAACATATCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTCTTAGGAGGAAACATATCCTTGTTGAGAAGTATTTTGTATTGGATTGCTCAATTGCTTGGTTCAGTTGTTGCTTGCATTCTTCTCAAGTATGCTACTGGTGGAATGGAAACATCAGCTTTTGCTCTATCCCCTGATGTGTCTACTTGGAATGCTTTAGTTTTTGAAATTGTGATGACTTTTGGGTTGGTATATACAGTTTATGCCACAGCATTAGACCCAAAGAAAGGGAATGTGAGCATTGTTGCTCCAATTGCAATTGGTTTTATTGTGGGTGCAAATATCTTTGCTGGTGGTGCTTTTGATGGTGCATCCATGAATCCAGCTGTGTCCTTCGGCCCTGCTGTGGTTAGCTGGACATGGACTCATCACTGGGTCTTTTGGGTTGGCCCTTTCATTGGTGCAGCAATTGCAGCCATTATCTATGATAATATCTTCATTGGTGATGAAGCTGCTGAACCCCTCTCAAGCAGTGATTTCTAG 792 0.4407 MGGNGEDGAWISTRH*IAIGSPGEASQPDAIRAAFAEFFSMIIFVFAGQGSGMAYSKLTNNGPATPAGVIAASLSHAFGLFVAVSVAANISGGHVNPAVTFGAFLGGNISLLRSILYWIAQLLGSVVACILLKYATGGMETSAFALSPDVSTWNALVFEIVMTFGLVYTVYATALDPKKGNVSIVAPIAIGFIVGANIFAGGAFDGASMNPAVSFGPAVVSWTWTHHWVFWVGPFIGAAIAAIIYDNIFIGDEAAEPLSSSDF* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00246 262 PANTHER AQUAPORIN-8 16 252 IPR034294 -
Rops8g00246 262 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Rops8g00246 262 FunFam Probable aquaporin TIP1-1 14 261 - -
Rops8g00246 262 Pfam Major intrinsic protein 24 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 CDD MIP 31 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 Gene3D Glycerol uptake facilitator protein. 14 262 IPR023271 -
Rops8g00246 262 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 PRINTS Major intrinsic protein family signature 31 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g00246 262 SUPERFAMILY Aquaporin-like 26 250 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00246 Rops-Chr8 5031466 5034718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00246 14 262 Major Intrinsic Protein MIP AT4G01470 81.124 6.15e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00246 K09873 - gmx:100780065 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00246 8 5031466 5034718 Rops8g00246 8 5031466 5034718 ECH