Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00243 ATGAAGAGAGAAAGAGAGGTTGATAACATAACCATGGCAAATTGTTTGATGTTGCTTTCTCGTGGAGGTGAATTTGAAGCCACCTATTCTAGCTCTTCTTCTAACAACCGTGTCTTTGAATGCAAGACATGTAACAGGCAGTTCCCTTCGTTTCAGGCACTTGGGGGTCACAGGGCTAGTCACAAGAAGCCAAGGTTGATGGCAGAAAATGGAGACATGGATGGCCAATTGCTACAAGGTTCACCACCAAAGCCTAAAACCCATGAATGTTCCATTTGTGGGTTGGAGTTTGCAATAGGGCAAGCTTTGGGAGGCCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGGAACATGCAGAATTCTACAACTATGAGTAATAGTAGTGGTAGCAGTCTTGATTCTTCACCACAAATGAAAGCTGACAAGAAAAGAATTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTGCTTTGGTTGATTATTTGTGTTGA 531 0.42 MKREREVDNITMANCLMLLSRGGEFEATYSSSSSNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAENGDMDGQLLQGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNMQNSTTMSNSSGSSLDSSPQMKADKKRILVLDLNLTPFENDLEFLKIGKPTALVDYLC* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00243 176 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Rops8g00243 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Rops8g00243 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Rops8g00243 176 Gene3D Classic Zinc Finger 21 114 - -
Rops8g00243 176 PANTHER ZINC FINGER PROTEIN ZAT5 5 158 - -
Rops8g00243 176 Pfam C2H2-type zinc finger 38 64 - -
Rops8g00243 176 Pfam C2H2-type zinc finger 88 112 - -
Rops8g00243 176 MobiDBLite consensus disorder prediction 117 137 - -
Rops8g00243 176 SUPERFAMILY beta-beta-alpha zinc fingers 37 110 IPR036236 -
Rops8g00243 176 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Rops8g00243 176 SMART c2h2final6 88 110 IPR013087 -
Rops8g00243 176 SMART c2h2final6 39 61 IPR013087 -
Rops8g00243 176 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00243 Rops-Chr8 5005774 5006439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00243 1 163 C2H2 Transcription Factor Family AT2G37430 46.857 4.39e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g00243 zf-C2H2_6 8.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00243 - - gmx:100781134 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00243 8 5005774 5006439 Rops8g00243 8 5005774 5006439 ECH