Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00239 ATGATGGTCGCATTTCGATTTTGGCCTAACCCCACTTATGACTGCTCCGCAACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGAAAGCACTCTCATAGGGCAGATGGGTATAGCTTGGATGTCCTCCTTCTCGAGACGCTTACAGGGAAGGCACCTCTCCAATCTCCGGGACGCGAAGATATGGCTAATCTGCTTAAGTGTATTGAAAGTGGTGTTTTAATAAATTTGAAGGACAGTGAGGGCTGGATACCATTGCACTGGGCTATGTATCGTGGCCACCTTAATGTCACAGAGTTGCTTGCGGAAAGGAATATTGATGTAAATGCAAAGGATAATGATGGGAGTTCCCCACGTGGCATGTAAACACTCTCTCTCTCTCATTCACAGTTGCATCGCTTCAACGCTACTAGGGTTCGCCCTTTTCAATTTCTCTCCCTTTTTCTTCACTCAGATGTGTTGTAA 480 0.4667 MMVAFRFWPNPTYDCSATPSRAAGYRAPEVIETRKHSHRADGYSLDVLLLETLTGKAPLQSPGREDMANLLKCIESGVLINLKDSEGWIPLHWAMYRGHLNVTELLAERNIDVNAKDNDGSSPRGM*TLSLSHSQLHRFNATRVRPFQFLSLFLHSDVL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00239 158 Gene3D Transferase(Phosphotransferase) domain 1 6 85 - -
Rops8g00239 158 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 65 123 - -
Rops8g00239 158 SMART ANK_2a 86 115 IPR002110 GO:0005515
Rops8g00239 158 SUPERFAMILY Protein kinase-like (PK-like) 23 77 IPR011009 -
Rops8g00239 158 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Rops8g00239 158 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00239 158 SUPERFAMILY Ankyrin repeat 63 133 IPR036770 -
Rops8g00239 158 Pfam Ankyrin repeats (many copies) 63 106 IPR002110 GO:0005515
Rops8g00239 158 ProSiteProfiles Ankyrin repeat region circular profile. 86 118 - -
Rops8g00239 158 Gene3D - 86 138 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00239 Rops-Chr8 4956305 4962611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00239 7 78 Receptor kinase-like Gene Family AT5G58300 54.167 4.26e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops8g00239 Ank_4 1.3e-05 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00239 - - gmx:100796171 97.8265