Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00231 ATGAGGAATGCTATAAAGGACAGAGAGATTAGTTTGAAGCTTTCTCCACAAGACAAGAAAAAGATCAACGAAGCAATTGATTCAGTCTTAGTGTGGCTTGATGTCAATGTGGTAGCAGAAAGTGATGATTTTGAGTATTATGGGAGCATTCTTTCGAGTGTCTTTGATCCGATTATTGTGAAGATGGTAAAAGATGAGGATAATGGTGCACCATCAGGAAAGCCAAACGTTTGCATAAGAGGTGCCATTATGTCAGAAGCTAGTCCTTATTCCATTGATATTGCAAAAATGAGAAATGCTCTTCTGCCATCAGTTTCTTCACGGCTTCAATGTTATGGAAATGATGAGGTTCAGTTGGAAATTTCAGAAGGTTCCATGCAGATGAATGACCTAAATGGTCATTTATATAGCAATGGCTTCAACATGGGGTCTAGAGTTGTCAACAATGACAACCAATTGGGCAAAGGAATCTATACACAGCCAAACCAGTCTCAGTCTCTGATTTACAACACCAATCATCAACCAGCTTCTTGTCAGACAGGTAGTCTATATGCCATCTCAAGCAGCACAGACATTTCTCAACAATCATTATTACTTGAAAAGGACCCTTCAATTTCTGAATATGAAGGAGTCAGTAAAAATGCCAGAAAACGTCCATTTGAGTATGTTGATAACATGTCATTGTGGAACAAGATGAAAAGCAATTCGAAAAGCAAGATCACATTCTTGGAACCGAAATGGCATCAAGTAAGAGAAGCTTCAGAGATAACCCCTCAGCACAAATTGCATGTGCCTATGAAGAAAAATCAGAAGATGAGCGATAAAGTAACAACTCTACAGAAGTTGGTTTCACCTTTTGGAAAGACTGACACTGCCTCAGTTCTTCATGAAGCTTCTCTTCATATCAAACTTCTTCAAGCACAAATCGGGACTTTGTATCAAATGCTGAGTCTCTCTTACATTAATACTGTTAAAGGTCCTCATACTCAGGAATGTGGGAACAAATTGCAGCTTGATCTAAGGAGAAGGGGACTTTGTTTGGTTCCCATATCAATCACTCAGAAAGTAGCAATGGAAGACCAGATTCTTCATGCTTCTGCCTCAAGAATTATTCTGCACTGA 1122 0.3904 MRNAIKDREISLKLSPQDKKKINEAIDSVLVWLDVNVVAESDDFEYYGSILSSVFDPIIVKMVKDEDNGAPSGKPNVCIRGAIMSEASPYSIDIAKMRNALLPSVSSRLQCYGNDEVQLEISEGSMQMNDLNGHLYSNGFNMGSRVVNNDNQLGKGIYTQPNQSQSLIYNTNHQPASCQTGSLYAISSSTDISQQSLLLEKDPSISEYEGVSKNARKRPFEYVDNMSLWNKMKSNSKSKITFLEPKWHQVREASEITPQHKLHVPMKKNQKMSDKVTTLQKLVSPFGKTDTASVLHEASLHIKLLQAQIGTLYQMLSLSYINTVKGPHTQECGNKLQLDLRRRGLCLVPISITQKVAMEDQILHASASRIILH* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00231 373 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 1 67 IPR029048 -
Rops8g00231 373 CDD bHLH_AtbHLH_like 267 312 IPR045239 -
Rops8g00231 373 Gene3D - 1 91 IPR029048 -
Rops8g00231 373 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 124 354 - -
Rops8g00231 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 316 IPR036638 GO:0046983
Rops8g00231 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00231 Rops-Chr8 4797619 4806902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00231 257 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21340 42.727 6.45e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00231 - - ccaj:109812405 392.119