Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00230 ATGGTGAACTTGATGGAATGGCAGAAGCAACCTTGGCATCCAAACGGTAACGCTGAAATGATGTACGTTAAGGTCATGACCGACGAACAACTCGAAACTCTGAGGAAACAAATCGCTGTTTACGCAACTATATGTGAACGACTCATTGAGATGCACAAAACCCTCTCTTCTCACCAAGATCTCACAGGGGTTAGGGTGGGAGGTTATTGTGACCCATTGATGGGTCCTGGTGGTCACAAAATAAGTTCGAGGCAGCGATGGACACCAACGGCTATGCAACTTCAGATTCTGGAGCGTATTTTTGAGGCTGGGACTGGGACTCCTAGCAAGGAAAAGATTAAGGAGATAACTGCGGAGTTAAGTCAGCATGGTCAAATTTCAGAGACTAATGTGTATAATTGGTTCCAGAATAGGCGTGCTAGATCCAAGAGGAAACAGCAGAGTGTGGTGAATGCTGAATCTGAAGTGGAGAATGAGGTTGATTCTAAGGATAAGAAGAGTAAACTGGATGAGTTTGTGTCACGACCCAGTGTGAATGCTGAAGATTTGCAGTACTTGAATCCAGAGACGGATAAACTGGAATCTATGTTCAACTCAGATGGGAGTCTAAAATCCACCACAAGTTTTGATCATGTGCCTATTTTTAATGGGATGCTATCAAACTCAAGGAGTGACTATCTTACTGGAAAAATGGAAGCACCTGAGAGCTACGACTTATACCAGCCAGCAGGGGATTACAACATGGCAGGTTGA 753 0.4422 MVNLMEWQKQPWHPNGNAEMMYVKVMTDEQLETLRKQIAVYATICERLIEMHKTLSSHQDLTGVRVGGYCDPLMGPGGHKISSRQRWTPTAMQLQILERIFEAGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQSVVNAESEVENEVDSKDKKSKLDEFVSRPSVNAEDLQYLNPETDKLESMFNSDGSLKSTTSFDHVPIFNGMLSNSRSDYLTGKMEAPESYDLYQPAGDYNMAG* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00230 250 CDD homeodomain 84 146 IPR001356 GO:0003677
Rops8g00230 250 PANTHER WUSCHEL-RELATED HOMEOBOX 13 6 248 IPR044559 GO:0003700
Rops8g00230 250 SMART HOX_1 82 149 IPR001356 GO:0003677
Rops8g00230 250 Pfam Homeodomain 84 144 IPR001356 GO:0003677
Rops8g00230 250 MobiDBLite consensus disorder prediction 146 162 - -
Rops8g00230 250 ProSiteProfiles 'Homeobox' domain profile. 80 145 IPR001356 GO:0003677
Rops8g00230 250 MobiDBLite consensus disorder prediction 143 162 - -
Rops8g00230 250 Gene3D - 85 150 - -
Rops8g00230 250 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00230 Rops-Chr8 4793471 4795680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00230 21 250 Wox Gene Family AT4G35550 52.941 1.19e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops8g00230 Homeodomain 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00230 - - gmx:100784355 402.519