Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00226 ATGGCCGCCGGCATCGACATGTCACTCGACGACATCATCAAGAAGTCCTCCGCCGCAGCATCTCGCCGCCGATCATACGGTCCCGGTCCTGAACGTCGCCGATCATACGGTCCCGGTCCGGAACGCCGCCTAGCCGTTCGCAACCCGACCAGAACGACGCCGTACTCCATCCCTCAGCATGCAAAGCAAGCATGGCGAGGAGGCATGGTTCAAGGAATGGCTTTGGATAATGGCGCTGCGGCTGAGACTGGCACCAAACTCTATATATCTAACTTGCATTATGAGGTTTCCAATGATGATATTATGCTGCTGTTCTCGGAAGAGGGTGAGTTGAAAAGATACTCCATTCATTATGACAGGAGTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTATGCTAGGCGGTCTGATGCTTTAGCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAATCTTTGCAAATTGAGCTTGTTGGAACAAGTTTTGTTACTCCTGCTGTTATGCCTCATTGTCAAAATAGCTTACTTGGAAGACCAAAGGATGTTCTTGTAAGTGAACAAGGAAAGTTTGGAGGAAGTAGGTTCCAGAATAGCTTTGCACGAGGCCATATTCCAAGGGGCCGTGGAGAAGAGAAGGATGTTCGAAAGGAGTCTTTTAAAGATCTTGATCATGACATGGAGGGGTATCACCACCGTGCAAGAGGGCACAGAGAAGTGAAGGGCCATATCCGAAAGGTGTCTGTTAAAGACCTCGATGAAGACTTGGAGAGGTATCACCTAGAGGCTATGAAGATAAATAAAGAAAATGGAAAGTGA 822 0.4781 MAAGIDMSLDDIIKKSSAAASRRRSYGPGPERRRSYGPGPERRLAVRNPTRTTPYSIPQHAKQAWRGGMVQGMALDNGAAAETGTKLYISNLHYEVSNDDIMLLFSEEGELKRYSIHYDRSGRSKGTAEVVYARRSDALAAIKKYNNMRLDGKSLQIELVGTSFVTPAVMPHCQNSLLGRPKDVLVSEQGKFGGSRFQNSFARGHIPRGRGEEKDVRKESFKDLDHDMEGYHHRARGHREVKGHIRKVSVKDLDEDLERYHLEAMKINKENGK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00226 273 Coils Coil 250 270 - -
Rops8g00226 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 162 IPR000504 GO:0003723
Rops8g00226 273 MobiDBLite consensus disorder prediction 16 59 - -
Rops8g00226 273 SUPERFAMILY RNA-binding domain, RBD 22 159 IPR035979 GO:0003676
Rops8g00226 273 SMART rrm1_1 86 158 IPR000504 GO:0003723
Rops8g00226 273 CDD RRM_THOC4 85 159 - -
Rops8g00226 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 155 IPR000504 GO:0003723
Rops8g00226 273 Gene3D - 62 240 IPR012677 -
Rops8g00226 273 MobiDBLite consensus disorder prediction 197 218 - -
Rops8g00226 273 MobiDBLite consensus disorder prediction 26 40 - -
Rops8g00226 273 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00226 Rops-Chr8 4753332 4755559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00226 84 159 Eukaryotic Initiation Factors Gene Family AT2G23350 31.579 4.94e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00226 K12881 - gmx:100785926 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00226 8 4753332 4755559 Rops8g00226 8 4753332 4755559 ECH