Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00172 ATGCCCATATGCAATCAATGCGCATGGAGCCGCCAGCTTAATTGGCAGAAGAAAACAATTAAGCGGTGCTTTGATTTGAAGTGGATTCTTGTCTGTCGAATATGCCACGATGAGGATGAAGACTCAAACATGGAGACACCCTGTTCTTGTCGTGGCACCTTGAAGTATGCACATCGAAGATGTGTTCAAAGATGGTGCAATGAAAAAGGTGATACTACCTGTGAGATTTGCCAACAGCAACTTAAAGGCTATACTGCACCTCCACCACCTCCCCTATTCCATTATGGTGATTCTCCAATAAATTTTGGAGGGAATTGGGAGATTTCAAGAAGGGATCTTCAGAATCATCAGTTTGTAGCAATGTTTACTGCTAATCATGAATTCCTAGACCTTGACTTCGAATATTCAGCACCCTCAACAAGGACCCTGATATTGTGCCGCATTGTTGCCACTATTTTTATTATTCTTCTTGTTTTACGCCATACACTTCCGGTCATAATTATCCTCAGTGGAGTAGGAGAGTATCCATTGACAATGCTTATGTTAGTAGTGTTGAGAATCGTTGGAATAATTGTACCGGTGTATATAACGGTTAAGGCTATCATTGCGATCCAACGGCTTCAATACCAGGATTATCATTCCCCTATGCAATCACATGAGGAAAATGGCATGGGCCGGTCTCAATTGCGTGTCATTCATATTCAGTGA 708 0.4195 MPICNQCAWSRQLNWQKKTIKRCFDLKWILVCRICHDEDEDSNMETPCSCRGTLKYAHRRCVQRWCNEKGDTTCEICQQQLKGYTAPPPPPLFHYGDSPINFGGNWEISRRDLQNHQFVAMFTANHEFLDLDFEYSAPSTRTLILCRIVATIFIILLVLRHTLPVIIILSGVGEYPLTMLMLVVLRIVGIIVPVYITVKAIIAIQRLQYQDYHSPMQSHEENGMGRSQLRVIHIQ* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00172 235 CDD RING_CH-C4HC3_MARCH 32 78 - -
Rops8g00172 235 ProSiteProfiles Zinc finger RING-CH-type profile. 24 84 IPR011016 GO:0008270
Rops8g00172 235 Pfam RING-variant domain 32 77 IPR011016 GO:0008270
Rops8g00172 235 SUPERFAMILY RING/U-box 30 81 - -
Rops8g00172 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 86 IPR013083 -
Rops8g00172 235 Pfam Protein of unknown function (DUF3675) 83 201 IPR022143 -
Rops8g00172 235 SMART ringv_2 31 78 IPR011016 GO:0008270
Rops8g00172 235 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 30 209 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00172 Rops-Chr8 3675401 3681986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00172 32 79 C3H Transcription Factor Family AT2G37950 50.980 1.29e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00172 - - gmx:100806609 326.25