Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00171 ATGGCCTTGCAGAACATTGGTGCTAGTAACAGTGATGATGCCTTCTATAGGTATAAAATGCCTAAAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAATGTTGTCAATATGGTTGATATCGCAAAGGCATTGGCAAGGCCAGCATCTTACACAACGAAGTATTTTGGTTGTGAACTTGGGGCTCAGTCGAAATTTGATGAGAAGACAGGCACTTCTCATGTTAATGGAGCACATGATACTGCAAAGCTTGCTGGTCTTCTTGAGAACTTCATTAAGAAATACGTCCAGTGTTATGGTTGTGGAAATCCAGAAACTGAGATCCTAATTACTAAGAGTCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATATGAGAGACAAGCTGACTACATTCATCGTTAAGAACCCTCCAGAAACAAAGAAAGGAACCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGCTGCTGATGAGGAGCTGAAAAAATTGAAGAAAGAGGTTAATAAGAAGAAAGGGACTACGTCTTCAAAGGATGGCACCACAAAATCTACCTCCTCAAAGAAGAAAGCAAAGGGCTCTGATGAAGATCGTACATCACCTACTCACAGTCAAATTGATGAGAAAGAGGAGGCTAATGATGAAGATGATGATGATGATGTACAATGGCAAACAGATACATCACTAGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCCGCGACAGCTGATATGGTTATGCTCTCTACAAACGAACCAGAGATGAAAAAAACTGTAAGTAAGGCAAGTGATGGTTCTGAGAATGGTAACTCCATACATTACAGGGCACTGGTTGGTGAAGTGAAAGCAAATTTGAAGAAAGGTGCTACGGCAAAAGAATTGCTGTCCCATCTAGCTACACTTTCTGCATCTGCTCAAGAAAAGATGAGTGCTCTGTATGAAGCCCTATTTGATGGCATTGAGAAAGGGATTGCAAAAGAAGCAATTAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCTGAGGAAGAGGGTAGGCAGTTGTTATTGCTTCGTGCAATTGAGGAATTTTCTTGCAAGTCCACTTCCAATGCATTGAAGGAGGTTCCCCTGGTTTTGAAGGCACTCTACGATGCTGATGTGTTGGAGGAAGAGCTCATAGTGCTGTGGTATCAGAAAGGGCTGAAAGGTGATAACAAGAACTCCCAGATCTGGAAGAAAGTTCAACCTTTCATTGATTGGCTTCAGAATGCGGAATCAGAATCGGAGGAAGAATAA 1329 0.4214 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPETKKGTKDKKAMRRAEKERLKEGEAADEELKKLKKEVNKKKGTTSSKDGTTKSTSSKKKAKGSDEDRTSPTHSQIDEKEEANDEDDDDDVQWQTDTSLDAARQRIQEQLSAATADMVMLSTNEPEMKKTVSKASDGSENGNSIHYRALVGEVKANLKKGATAKELLSHLATLSASAQEKMSALYEALFDGIEKGIAKEAIKKKSYLAAAVAEEEGRQLLLLRAIEEFSCKSTSNALKEVPLVLKALYDADVLEEELIVLWYQKGLKGDNKNSQIWKKVQPFIDWLQNAESESEEE* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00171 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0003743|GO:0006413
Rops8g00171 442 CDD W2_eIF5 295 440 - -
Rops8g00171 442 SMART 542_3 350 438 IPR003307 GO:0005515
Rops8g00171 442 Coils Coil 170 190 - -
Rops8g00171 442 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Rops8g00171 442 Gene3D - 2 104 - -
Rops8g00171 442 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Rops8g00171 442 SUPERFAMILY ARM repeat 294 436 IPR016024 -
Rops8g00171 442 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Rops8g00171 442 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Rops8g00171 442 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Rops8g00171 442 MobiDBLite consensus disorder prediction 148 225 - -
Rops8g00171 442 ProSiteProfiles W2 domain profile. 285 442 IPR003307 GO:0005515
Rops8g00171 442 Gene3D - 288 442 - -
Rops8g00171 442 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Rops8g00171 442 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Rops8g00171 442 MobiDBLite consensus disorder prediction 145 238 - -
Rops8g00171 442 Coils Coil 432 442 - -
Rops8g00171 442 Gene3D - 105 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00171 Rops-Chr8 3672399 3674294 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00171 1 435 Eukaryotic Initiation Factors Gene Family AT1G36730 64.653 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00171 K03262 - gmx:100796346 662.529