Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00168 ATGGCCTTACAGAACATTGGTGCTAGTAACAGTGATGATGCCTTCTATCGGTATAAAATGCCTAAAATGATTACCAAAATAGAGGGTAGAGGTAATGGCATCAAAACAAATGTTGTCAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCATCTTACACAACAAAGTATTTTGGTTGTGAACTTGGGGCTCAGTCGAAATTTGATGAGAAGACAGGCACTTCTCATGTTAATGGAGCACATGATACTGCAAAGCTTGCTGGTCTTCTTGAGAACTTCATTAAGAAATACGTCCAGTGTTATGGTTGTGGAAATCCAGAAACTGAGATCCTAATTACTAAGAGTCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATATGAGAGACAAGCTGACTACATTCATCGTTAAGAACCCTCCAGAAACAAAGAAAGGAACCAAAGACAAGAAAGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGCTGCTGATGAGGAGCTGAAAAAATTGAAGAAAGAGGTTAATAAGAAGAAAGGGACTACGTCTTCAAAGGATGGCACCACAAAATCTACCTCCTCAAAGAAGAAAGCAAAGGGCTCTGATGAAGACCGTACATCACCTACTCACAGTCAAATTGATGAGAAAGAGGAGGCTAATGATGATGATGATGTACAATGGCAAACAGATACATCACTAGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCCGCGACAGCTGATATGGTTATGCTCTCTACAAATGAACCAGAGATGAATAAGGCAAGTGATGGTTCTGAGAATGGTAACTCCATACACTACAGGGCACTGGTTGGTGAAGTGAAAGCAAATTTGAAGAAAGGTGCTATGGCAAAAGAATTGCTGTCCCATCTAGCTACACTTTCTGCATCTGCTCAAGAAAAGATGAGTGCTCTGTATGAAGCCCTATTTGATGGCATTGAGAAAGGGTTCACAAAAGAAGCGAATAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCTGGGGAAGAGGGATCACAGTTGTTATTGCTTCATGCTATTGAGGAATTTTGTTGCAAGTCCACTTCCAATGCATTAAAGGAGGTTGCCCTGGTTTTGAAGGCACTCTATGATGCTGATGTGTTGGAGGAAGAGCAGATAGTGCTGTGGTATCAGAAAGGGCTGAAAGGAGATAACAAGAACTCTGTGATTTGGAAGAATGTTCAACCTTTCATTAAGTGGCTTCAGACTGCGGAATCAGAATCGGAGGAAGAATGA 1308 0.4197 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPETKKGTKDKKAMRRAEKERLKEGEAADEELKKLKKEVNKKKGTTSSKDGTTKSTSSKKKAKGSDEDRTSPTHSQIDEKEEANDDDDVQWQTDTSLDAARQRIQEQLSAATADMVMLSTNEPEMNKASDGSENGNSIHYRALVGEVKANLKKGAMAKELLSHLATLSASAQEKMSALYEALFDGIEKGFTKEANKKKSYLAAAVAGEEGSQLLLLHAIEEFCCKSTSNALKEVALVLKALYDADVLEEEQIVLWYQKGLKGDNKNSVIWKNVQPFIKWLQTAESESEEE* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00168 435 Coils Coil 170 190 - -
Rops8g00168 435 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 434 IPR045196 GO:0003743|GO:0006413
Rops8g00168 435 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Rops8g00168 435 CDD W2_eIF5 288 433 - -
Rops8g00168 435 MobiDBLite consensus disorder prediction 145 235 - -
Rops8g00168 435 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Rops8g00168 435 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Rops8g00168 435 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Rops8g00168 435 MobiDBLite consensus disorder prediction 148 225 - -
Rops8g00168 435 Gene3D - 281 435 - -
Rops8g00168 435 SMART 542_3 343 431 IPR003307 GO:0005515
Rops8g00168 435 Pfam eIF4-gamma/eIF5/eIF2-epsilon 357 435 IPR003307 GO:0005515
Rops8g00168 435 Gene3D - 2 104 - -
Rops8g00168 435 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Rops8g00168 435 Gene3D - 105 145 - -
Rops8g00168 435 FunFam Eukaryotic translation initiation factor 5 281 426 - -
Rops8g00168 435 SUPERFAMILY ARM repeat 287 429 IPR016024 -
Rops8g00168 435 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Rops8g00168 435 ProSiteProfiles W2 domain profile. 278 435 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00168 Rops-Chr8 3655734 3671528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00168 1 428 Eukaryotic Initiation Factors Gene Family AT1G77840 63.326 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00168 K03262 - gmx:100778073 673.315