Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00166 ATGGATTCCCAATCCAAACCCCAAACCCTAGAAGAGATAGATTCCACCAAGTTGTTCCTCACCGCTCGTCAATCCCTACCGGAACCCTCTCCGCCGCCGCCACCGTCACCGTCACTTCCTGTCCCATCCTCTTTCCCTCACTCCAAACTCATCCCAAACACTCGCTTCATCGTCGACGCTTTCCGCCACGCCGGCGACTTCTCCGTCACATACTTCCTCTCACATTTCCACTCCGACCACTACACCGGCCTCTCCTCCACCTGGTCCTGCGGCATTATATTCTGTTCCCACACCACTTCCCTTCTTCTCATTCACATCCTCAAAATCCCTTCACCCTTCGTTTTCCCTCTCCCTCTCAACCAAACCGTTCAAATCGATGGTTCTAGAATCACGCTCATTGACGCCAATCACTGTCCCGGCGCCGTTCAATTCCTCTTTGAAATCCCCGCCGTGGATGGAACTTCCCAGAGGAGGTACGTTCACACCGGCGATTTCCGATTCTCTCGTTCCATGTTATCAGAACCTGCACTTGCTCCTTTTGTTGGTGCCGATGCTGTGTTTTTGGACACCACTTATTGTAACCCTAAGTTTGTTTTTCCCTCACAAGATGAGTCTGTTGATTATGTTGTTCGTGTTGTGAGTGAGTGTGATGATGATGATGTATTGTTTCTTGTTGCCACTTATGTTGTTGGGAAGGAGAAGATTTTGCTTGAGCTGGCGAAAAGGTTTAAGAAGAAGGTACATGTGGATGCTAGAAAAATGGAGGTTTTGAGGGTTCTTGGTTATGGAGGGAGTGGTGAGTTTACTGAGGATGGATTGGAGACTAATATTCATGTTGTTGGTTGGAATGTGTTGGGGGAGACTTGGCCTTATTTTAGGCCTAATTTTGTTAGATTGAAGGAGATTATGACTGAGAGAGGGTACTCCAAGGTTGTCGGTTTTGTGCCAACTGGATGGACCTATGAAGTGAAGCGCAATAGGTTTGCGGTCAAGTCCAAGGATTCTTGCCAGATTCATCTGGTGCCGTATAGTGAGCATTCGAACTATGATGAACTCAGGGAATATGTGAAGTTTTTGAAACCGAAGCGTGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAAAGCGACAGCAAACATGCTAACAAAATGAGGAAGTATTTTGCTGGGTTAGTTGATGAGACAGCCAACAAACAGGAGTTTTTAAGGGGTTTTCAGCGTGCCTCTGGTGAAGTGGATTTCAAGGCTGAGAAGGATGTTAGTGATGCTCTGGAATCAGGAGAAAGAATGGAGAAAGAAATCAAGCCATCTGATGTGGAAGGGGATAAAAGTATTAATCCAGACATTGCTGTGAGTTTGTCCTCTTCTATGGAAGAAACTTGCACACGAGCTCCTACTTTACTAAATGATGAAGAAAAAGAGAAAATTATTCAAGAACTTAGTGGTTGTTTGCCCACATGGGTCACTCGAAGCCAGATGTTAGATCTGATTGGCATCTCAGGGAGCAACGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGAGCAAGTAAATTCCGGTCAAATTTCAGTTTCAACATCTAAGTGCTGCTCATCAAATGACACTGATTCACTTTCAAAATCATGCCTAAATACAAATAACACTTACAGAAACGTTGACATTTTTCCAAGTCAAGACGCTAAATTAACTAACCTGAGGCATACAGTACCAAGTCACACTTCCCCTGGCAAAAAAAAGAGGAATAGTAAAAGTAAGCCAAACAAGAGGGTAAAAGTCAAAGCAGAATCAAGTGGTTCAAAGCAGTCAACAATAACAAGATTCTTCAGCAAAGTAATCTCTGAGATGCCTGGTGGTACTCAATCTGATCATTTACTTGACGACAGCCCTGAAGTTGAAGACTTGTTACCAACCGATGTTGGAAAATTGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGGAATGAATCATTAAAAAAGTATGCTGTCACTCTAATTGAGAAGACAAAAGGAGATGTCAATAAGGCATTGGATATATATTACTGTAATTCTGCTAATCTTGGTGAAAATGAAATATCAGCTCAAGAGGAGTGCAACATTGGCAGACCTTTAGAAAAGAAATATGCATCACAGGAATTGAGAGTTATACCTGATATATCTGTGCAGAGGGTGTTAAGAGATAATGTAGATGCAACTCATGTGTCTCTACCACCTGAGAAGTACCACCCTACGGAACATGCATGTTGGAGAGATGGACAGCCTGCACCTTATTTACATCTTGCACGAACCTTCAACCTGCTTGAGGATGAGAAAGGAAAGATAAAAGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGCAGATGTGCTTCCTGTTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTTGAAGAGGCATGCGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGTGACCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCCCCACCAACACCACTTCTAATTAAGGATGTGTACTCTGCACTACAAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTCCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACTTAAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTGGTTATGAATTCTTGCCCTACTGTACACCAAGAAGGAACTGCAGAAAATTTGAAGGAAAAGCTTCAGGTCCTTTCCGTAGCTGTTGTTGAAGCATATAACATACTGCCAAGTTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCATTGAAACTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAGTTGATGGATCAATTCGTGTTTTTTCGAGAAATGGCGATGAATCAACTTCAAGATTTCCTGATCTGATTAACATAATTAAGGAATCCTGCAAGCCTGTTGCCTCAACTTTCATAGTGGACGCAGAGGTAGTTGGTATTGATAGAAAAAATGGATATAGGATCATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAAGCAAAGATACTTTAGTTACTACAGAGAGCATAAAGGTGGGCATTTGTGTCTTTGTCTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTGTCCTCTCCGCCTAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATACGCAAAAGAAACAACTATCGAAGCAGACGATGCTTGCATAACGTGTGAAGGCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTCACTCTTCATGTGAAGGAATTATGGTGAAATCGTTGGATGTCGATGCTGGGTATTCTCCATCCAAGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGACACTCTTGATTTAGTACCAATCGGTGCGTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACGGAGGAGTACCAAAGTGTATGCCGTGTGATGTCTGGATTCTCAGATTCATTTTACATCGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAGCCACCGTATTATCAAACAGGAGAGGCACCAGACATGTGGTTTTGTCCGCTACTTGTTTGGGAAATACGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTAGCTGTGTGTCTGACAGAAACCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCATTCTCAGACTTGGAAGATGGATGTCACAACTGAAGATTGA 4176 0.4224 MDSQSKPQTLEEIDSTKLFLTARQSLPEPSPPPPPSPSLPVPSSFPHSKLIPNTRFIVDAFRHAGDFSVTYFLSHFHSDHYTGLSSTWSCGIIFCSHTTSLLLIHILKIPSPFVFPLPLNQTVQIDGSRITLIDANHCPGAVQFLFEIPAVDGTSQRRYVHTGDFRFSRSMLSEPALAPFVGADAVFLDTTYCNPKFVFPSQDESVDYVVRVVSECDDDDVLFLVATYVVGKEKILLELAKRFKKKVHVDARKMEVLRVLGYGGSGEFTEDGLETNIHVVGWNVLGETWPYFRPNFVRLKEIMTERGYSKVVGFVPTGWTYEVKRNRFAVKSKDSCQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHANKMRKYFAGLVDETANKQEFLRGFQRASGEVDFKAEKDVSDALESGERMEKEIKPSDVEGDKSINPDIAVSLSSSMEETCTRAPTLLNDEEKEKIIQELSGCLPTWVTRSQMLDLIGISGSNVVEAVSNFYERETEFHEQVNSGQISVSTSKCCSSNDTDSLSKSCLNTNNTYRNVDIFPSQDAKLTNLRHTVPSHTSPGKKKRNSKSKPNKRVKVKAESSGSKQSTITRFFSKVISEMPGGTQSDHLLDDSPEVEDLLPTDVGKLYKDEIDQFMQIINGNESLKKYAVTLIEKTKGDVNKALDIYYCNSANLGENEISAQEECNIGRPLEKKYASQELRVIPDISVQRVLRDNVDATHVSLPPEKYHPTEHACWRDGQPAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPVVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVYSALQKISVQTGNGSTFRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSCPTVHQEGTAENLKEKLQVLSVAVVEAYNILPSLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHRLVDGSIRVFSRNGDESTSRFPDLINIIKESCKPVASTFIVDAEVVGIDRKNGYRIMSFQELSSRGRGSKDTLVTTESIKVGICVFVFDIMFANGEQLLGCPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACITCEGTLTKINAFLEDALHSSCEGIMVKSLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEAPDMWFCPLLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISCVSDRNPEECSTAADIVEMFHSQTWKMDVTTED* 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00166 1391 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 741 991 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops8g00166 1391 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1032 1040 IPR016059 GO:0003909
Rops8g00166 1391 CDD SNM1A-1C-like_MBL-fold 49 195 - -
Rops8g00166 1391 FunFam DNA ligase 198 346 - -
Rops8g00166 1391 Pfam DNA repair metallo-beta-lactamase 267 369 IPR011084 -
Rops8g00166 1391 Gene3D - 198 346 - -
Rops8g00166 1391 MobiDBLite consensus disorder prediction 26 42 - -
Rops8g00166 1391 FunFam DNA ligase 739 1010 - -
Rops8g00166 1391 MobiDBLite consensus disorder prediction 568 602 - -
Rops8g00166 1391 MobiDBLite consensus disorder prediction 576 591 - -
Rops8g00166 1391 Gene3D - 51 368 IPR036866 -
Rops8g00166 1391 SUPERFAMILY Nucleic acid-binding proteins 1237 1381 IPR012340 -
Rops8g00166 1391 CDD OBF_DNA_ligase_I 1237 1380 - -
Rops8g00166 1391 FunFam DNA ligase 1037 1168 - -
Rops8g00166 1391 Gene3D - 739 1010 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops8g00166 1391 Gene3D - 1233 1390 IPR012340 -
Rops8g00166 1391 ProSiteProfiles ATP-dependent DNA ligase family profile. 1119 1266 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Rops8g00166 1391 CDD Adenylation_DNA_ligase_I_Euk 999 1231 - -
Rops8g00166 1391 MobiDBLite consensus disorder prediction 22 44 - -
Rops8g00166 1391 NCBIfam ATP-dependent DNA ligase 820 1378 IPR000977 GO:0003910|GO:0005524|GO:0071897
Rops8g00166 1391 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 279 1383 - -
Rops8g00166 1391 Pfam DNA ligase N terminus 762 938 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops8g00166 1391 SUPERFAMILY Metallo-hydrolase/oxidoreductase 54 369 IPR036866 -
Rops8g00166 1391 FunFam DNA ligase 1233 1390 - -
Rops8g00166 1391 Gene3D - 1019 1232 - -
Rops8g00166 1391 Gene3D DNA ligase/mRNA capping enzyme 1037 1168 - -
Rops8g00166 1391 Pfam ATP dependent DNA ligase domain 1008 1228 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Rops8g00166 1391 Pfam ATP dependent DNA ligase C terminal region 1254 1361 IPR012309 GO:0003910|GO:0006281|GO:0006310
Rops8g00166 1391 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 964 1230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00166 Rops-Chr8 3605286 3622695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00166 744 1381 Core DNA Replication Machinery Family AT1G08130 39.062 2.20e-165 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00166 - - gmx:100807673 2295.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00166 8 3605286 3622695 Rops8g00166 8 3605286 3622695 ECH