Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00158 ATGGATTTCAGCAATGATTCAGTTTTACCAAATCAGCTGCCGAATTCTATGTCATTTCCCCCTTGTCCGATACCTCAGCACCAGGAAAATGGAGAGAAGGAGAAACTCCAACTTTTTTGGCAGAAGCAGATGTTCAATATCCAAGTTGCTGAAGCATTTAAGAGCCAGCAACAGTTGCCACTCGCTCGAATCAAAAGGATCATGAAATCTGACTGGGATATGATCAGTGGTGAAGCTCCATTGCTGATGGAAAAAGCATGTGAGGTTTTCATTCAGGAGCTCACCTTTCGTGCCTGGATGCGTGCTGAAGAGACCAATGAAAGTATTGTGCTGCCTTCTGATGTTGCCAAGGCCATTATGCAAAATGATGTCTTTGAGTTCTTGAAAGATGTTATTCCAAATGACCTCCTTCAGTACTTTGCTAATCACGGCCAGGAAGAGATTGCTGGAAACTTTGTAGAAGGATATCAAGCTGTCCTTTCTCATGCTTCTGGTTTTATGGGAAATCCCATGATGAATTTGGGCAGTGAAGAGAATGATGGAAACTTTGTGGAAGGAAACCAAGCTGCTCAGCCTCATGCTGCTGCTTTTATGGGAAATCCCATGAGTGATATGGTTAGTGATCTGGTGGCACGAAACCAACAGTTTCTTCAACCCTATATGATTCAGGAAAAGAATGGTGGAAACTTTGTAGCAGAGAACCAAGCTACCCTGCCTAGTGCTGCTGGTTTTATGGGAAATCCTATGATGAATAGGGGCAGTGAAGAGAATGTAGGAAACTTTGTGGAAGGCAACCAAGCTGCCTTGCCTCATGCTGCTGGTTTTATGGGAAATCCTATGATGAATATGGGCAGTCAGGAAGAGAATGCTGGAAACTTCGTGGAAGGAAACCAAGCCGCCCTTCCTTATGCTGCTGGTTTTATGGGAAATCCCATGATGAATATGGGCAGTGAAGAGAATGCTGGAAACTTTGTGGAAGGAAACCAAGCCACCCTTTCTCTTGCTGCTGGTTTTATGGGAAATCCCATGATGAATATGGGCAGTGACCTGGTGGCAGGAAACCAACAGTTTCCTCAACTCTACATGATACAGCCACCATTTATGCCTTCAGATCAAATGCCTTACAATAGTCATCCCAAGTGA 1143 0.4418 MDFSNDSVLPNQLPNSMSFPPCPIPQHQENGEKEKLQLFWQKQMFNIQVAEAFKSQQQLPLARIKRIMKSDWDMISGEAPLLMEKACEVFIQELTFRAWMRAEETNESIVLPSDVAKAIMQNDVFEFLKDVIPNDLLQYFANHGQEEIAGNFVEGYQAVLSHASGFMGNPMMNLGSEENDGNFVEGNQAAQPHAAAFMGNPMSDMVSDLVARNQQFLQPYMIQEKNGGNFVAENQATLPSAAGFMGNPMMNRGSEENVGNFVEGNQAALPHAAGFMGNPMMNMGSQEENAGNFVEGNQAALPYAAGFMGNPMMNMGSEENAGNFVEGNQATLSLAAGFMGNPMMNMGSDLVAGNQQFPQLYMIQPPFMPSDQMPYNSHPK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00158 380 Gene3D Histone, subunit A 23 134 IPR009072 GO:0046982
Rops8g00158 380 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 151 - -
Rops8g00158 380 FunFam Nuclear transcription factor Y subunit C 23 134 - -
Rops8g00158 380 SUPERFAMILY Histone-fold 4 128 IPR009072 GO:0046982
Rops8g00158 380 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 119 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00158 Rops-Chr8 3494353 3501122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00158 36 138 CCAAT-HAP5 Transcription Factor Family AT1G56170 52.381 9.41e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops8g00158 CBFD_NFYB_HMF 2.7e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00158 - - gsj:114370134 154.451