Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00145 ATGTTGTCCCTCTCTTCTCTCATCGCCATCTTCATCTTCTCTCTCCACCGTACGACGTCGTTATCTCTCTCTAGCTGCCATAACACAACCTTCAACTGTGGCACCATCACCAACCTTTCCTACCCTTTCACCGGCGGTGACCGCCCCTCCTTCTGTGGGCCACCACAGTTCCATTTGAGCTGCAACGACGACGTTCCCGAGTTGAATATCTCATCAGTGAGTTACCGAGTCGTTCAAATCAACTCGGCGACTAGCACCCTCACCTTAGCAAGATTAGACCTTTGGAACAATACATGTACCCATCACTACGTTAACTCAACTTCTGATGACACCAGTTTTAGCTACGGTTCAGGGAACCGTAACCTCACCTTGTTTTATGGGTGCAAACCCACTTCCGCATTCACCAATAAACCAGATAATTTATTTCAGTGTGAGGGTAATGGGGATAAGAGTGATTCTTATTCTTTGGTTGGTCCATTTCCTTTGGACCCAGTTCTTAGCTTTGTTGAATGTGAGGAACGTGTTGGGGTGCCAATTCTTGAAGAGCAGGCTGATAGGCTTGTAGAAAACCGTTCTTTGCTTAGGGAAGTTTTGATGAAGGGGTTTAATGTGAATTATAGCAATCCTTATGACAATGATTGTTTGGAGTGTCTTGCTTCTGGTGGCCAACAGTGTGGGTTTGATTCTGATGACAATGAACCCATTTGTATCTGTGGTGATCAGTTGTGTTCATCTCCAGAAAATGGCAGCTCCAAAAAAGTAGCAATTGGAATAGGCGTTGCTGCTGGAGTTGCAGCCCTTGCTGGTATTCTTGGCTTCGTGTGCTTTAAAGTGCAACGAAGGAGAAAAATTGCTGAGCAATCAAGAGGCAAAGACCGCTTCATGCAGAATTCAAGCAGTGTCGCTCTTACCTCTACTACAAATTTGTCTCAAAGTGTCTCTTCTTACCCCTCTTCCAAGTCTGACACAGTGCAGAATAGTTTCTACTTTGGTGTCCACGTGTTTGACTATGCTGAACTAGAGGAAGCTACCAAGAATTTTGACACTTCTAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTGTGGTGGCAGTGAAACGCCATTATGAAAGCAACTTTAAACGTGTTGAGCAGTTCATGAATGAAGTTCAGATTCTAGCTCGCTTAAGGCATAAGAACCTTGTGACACTCTATGGATGCACCTCTAGACACAGCCGAGAACTTCTCCTTGTTTATGAATTCATTCCTAATGGAACAGTGTCTGATCATCTTCATGGAAACCGATCAAAATCGACTTTAATCCCTTGGCCTGTAAGATTGAACATTGCAATAGAAACAGCTGAGGCACTAACCTACCTCCATACAAAAGATGTCATACACCGTGATGTTAAATCCAACAACATTCTCCTAGATGAAAAATTTCATGTAAAGGTTGCTGATTTTGGTCTCTCACGGTTGTTCCCACATCATGTCACTCATGTGTCAACTGCTCCACAAGGAACACCTGGTTATGTTGACCCTGAGTATTATCAGTGCTACCAACTCACTGATAAGAGTGATGTTTATAGCTTTGGGGTCCTCTTAATTGAGCTCATATCTTCATTACAAGCTGTGGACATCAGCAGGCATCGCAATGATGTGAACTTGGCTAATATGGCCATCAATAAAATTCAGAACCAAGAATTGCATGAGTTGGTTGATCCATATCTTGGATTTGAAAAAGACTATGCTGTGAGTCAGATGATAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAGCAGCAGAGAGACATGAGACCCTCCATGGATGAGGTGCTGGAGATCTTGAGAGGAATCAAGAGTGAAGAGCTTGACACAAGGGAAGCAAAAGTAGTGGATGTTAGGATAGATGAACTTGTACTTTTGAAGAAGGTTCCTTCCCCAGTTTCACCAAATTCAGTTGCTGATAGATGGACAAGGGAGATGCTAAGAACGGCTTAA 2010 0.4363 MLSLSSLIAIFIFSLHRTTSLSLSSCHNTTFNCGTITNLSYPFTGGDRPSFCGPPQFHLSCNDDVPELNISSVSYRVVQINSATSTLTLARLDLWNNTCTHHYVNSTSDDTSFSYGSGNRNLTLFYGCKPTSAFTNKPDNLFQCEGNGDKSDSYSLVGPFPLDPVLSFVECEERVGVPILEEQADRLVENRSLLREVLMKGFNVNYSNPYDNDCLECLASGGQQCGFDSDDNEPICICGDQLCSSPENGSSKKVAIGIGVAAGVAALAGILGFVCFKVQRRRKIAEQSRGKDRFMQNSSSVALTSTTNLSQSVSSYPSSKSDTVQNSFYFGVHVFDYAELEEATKNFDTSRELGEGGFGTVYKGELKDGRVVAVKRHYESNFKRVEQFMNEVQILARLRHKNLVTLYGCTSRHSRELLLVYEFIPNGTVSDHLHGNRSKSTLIPWPVRLNIAIETAEALTYLHTKDVIHRDVKSNNILLDEKFHVKVADFGLSRLFPHHVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVLLIELISSLQAVDISRHRNDVNLANMAINKIQNQELHELVDPYLGFEKDYAVSQMITAVAELAFRCLQQQRDMRPSMDEVLEILRGIKSEELDTREAKVVDVRIDELVLLKKVPSPVSPNSVADRWTREMLRTA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00145 669 Pfam Wall-associated receptor kinase galacturonan-binding 26 90 IPR025287 GO:0030247
Rops8g00145 669 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Rops8g00145 669 Pfam Protein kinase domain 348 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00145 669 SUPERFAMILY Protein kinase-like (PK-like) 323 623 IPR011009 -
Rops8g00145 669 FunFam Wall-associated receptor kinase-like 20 424 632 - -
Rops8g00145 669 Gene3D Phosphorylase Kinase; domain 1 318 423 - -
Rops8g00145 669 ProSiteProfiles Protein kinase domain profile. 347 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00145 669 CDD STKc_IRAK 353 622 - -
Rops8g00145 669 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Rops8g00145 669 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 319 423 - -
Rops8g00145 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Rops8g00145 669 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 662 IPR044652 GO:0004672
Rops8g00145 669 Pfam Wall-associated receptor kinase C-terminal 165 241 IPR032872 -
Rops8g00145 669 SMART serkin_6 347 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00145 Rops-Chr8 3357167 3360505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00145 31 662 Receptor kinase-like Gene Family AT1G25390 42.879 6.42e-150 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops8g00145 Pkinase 6.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00145 - - cam:101490779 1020.38