Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00142 ATGGCCGAGCAAGCAAGAAGCAAGGACCTCCTCATGCCTACTTCAATGCAGAGTCGTTCCTACTTTGTTGGTGTCAATGTTTTTACCTATGCTGAACTAGAGGAAGCTACCGAAAATTTTCACACTTCTAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGAGTGGTTGCAGTGAAACGCCATCATGAAAAAATTTTTAAACGTGTTCAGCAATTCACGAATGAAGTTCAGATCCTAGCTCGCTTACGGCATAAGAACCTGGTGACACTCTATGGATGCTCTGCTAGACATAGCCGAGAACTTCTCCTTGTTTATGAATTCATACCTAATGAAACAGTGGCTGATCATCTTCATGGAAAACGATCAAAATCTAATTTACTCCCTTGGCATGTAAGATTGAACATTGCAGTAGAAACAGCTGAGGCACTAGCCTACCTCCATGCATCGGATGTCATACACCGCGATGTTAAATCCAACAATATTCTCCTAGATGATGAATTTCACGTAAAGGTTGCCGATTTTGGTCTCTCAAGGTTGTTCCCAGATAATGTCACTCATGTGTCAACTGCTCCTCAAGGAACACCTGGTTATCTTGACCCTGAGTATCATCAGTGCTACCTTCTCTCTGATAAAAGTGATGTTTTTAGCTTTGGGGTCGTCTTAGTTGAGCTCATATCATCATTACAAGCTGTGGACTTTAGCAGGCAAAACAATGATGTGAACTTAGCTAATATGGCCGTCAATAAAATTCAGAACCAAGAATTGCATGAGTTGGTTGATCCATTTCTTGGATTTGAAAATGATTGTGTTGTAAGGCAGACGACAACAGAAGTGGCAGTATTGGCATTTAGGTGTTTGCAGCGACAAAGAGACTTGAGACCCTCGATGGATGAGGTGCTGGAGATCTTGAGAGGAATCATGAGTGATGAGCTTGACAGAAGGGAAGGGAAGCAAAAGTAG 987 0.4235 MAEQARSKDLLMPTSMQSRSYFVGVNVFTYAELEEATENFHTSRELGEGGFGTVYKGELKDGRVVAVKRHHEKIFKRVQQFTNEVQILARLRHKNLVTLYGCSARHSRELLLVYEFIPNETVADHLHGKRSKSNLLPWHVRLNIAVETAEALAYLHASDVIHRDVKSNNILLDDEFHVKVADFGLSRLFPDNVTHVSTAPQGTPGYLDPEYHQCYLLSDKSDVFSFGVVLVELISSLQAVDFSRQNNDVNLANMAVNKIQNQELHELVDPFLGFENDCVVRQTTTEVAVLAFRCLQRQRDLRPSMDEVLEILRGIMSDELDRREGKQK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00142 328 FunFam receptor-like serine/threonine-protein kinase NCRK 14 116 - -
Rops8g00142 328 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 319 IPR044652 GO:0004672
Rops8g00142 328 FunFam Wall-associated receptor kinase-like 20 117 325 - -
Rops8g00142 328 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Rops8g00142 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Rops8g00142 328 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00142 328 Gene3D Transferase(Phosphotransferase) domain 1 117 325 - -
Rops8g00142 328 Gene3D Phosphorylase Kinase; domain 1 12 116 - -
Rops8g00142 328 Pfam Protein kinase domain 40 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00142 328 PIRSF ILK 21 327 - -
Rops8g00142 328 ProSiteProfiles Protein kinase domain profile. 40 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00142 328 SUPERFAMILY Protein kinase-like (PK-like) 17 312 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00142 Rops-Chr8 3308290 3309452 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00142 22 319 Receptor kinase-like Gene Family AT1G25390 62.876 1.84e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops8g00142 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00142 - - cam:101490779 510.76