Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00140 ATGCACTGCACCTCTAGAGATAGCCGAGAATTTCTCCTTGTTTGTGAATTCATACCTAATGGAACATTGGCTGGTCATCTTCATGGAAAACGACCAAAATCAACTTTCCTCCCTTGGCCTGTAAGATTGAACATTGCAGTAGAAACATGTGAGGCACTAGCCTACCTCCATGCATGTGATGTCATACACTGTGATGTTAAATCCAACAACATTCTCCTAGATGAAAAATTTCATGTAAAAGTTACAGATTTTGGTCTCTCACGGTTGTTCCCAAATAATGTCACTCATGTGTCAATTGGACCACAAGGAACACCTGGCTATGTTGACCCTGAGGACCATGATTGCTTCCAACTCTCTGATAAGAGTGATGTTTATAGCTTTGGGGTTGTCTTAGTTGAGCTCATATCATCATTACATGTTTTGGACCTCAGCAGGAATGATGTGATTTTAGCTGATATGGCCGTCAATAAAATTCAGAACCAAGAATTGCATGAGTTGGTGGATCCATATCTTGGATCTGAGAAAGACTATGCTGTAAGGCAGATGACAATAGAAGTGACAATATTGGCTTTTAGGTGTTTGCAGCGGCAGAGAAACATGAGACCCTCCATGGATGAGGTGCTAGAGATCTTGAGAGGAATCACGAGTGACGAGATTAACACAGGGAAGCAAAAGTAG 678 0.4159 MHCTSRDSREFLLVCEFIPNGTLAGHLHGKRPKSTFLPWPVRLNIAVETCEALAYLHACDVIHCDVKSNNILLDEKFHVKVTDFGLSRLFPNNVTHVSIGPQGTPGYVDPEDHDCFQLSDKSDVYSFGVVLVELISSLHVLDLSRNDVILADMAVNKIQNQELHELVDPYLGSEKDYAVRQMTIEVTILAFRCLQRQRNMRPSMDEVLEILRGITSDEINTGKQK* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00140 225 SMART serkin_6 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00140 225 ProSiteProfiles Protein kinase domain profile. 1 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00140 225 SUPERFAMILY Protein kinase-like (PK-like) 5 211 IPR011009 -
Rops8g00140 225 PIRSF ILK 3 224 - -
Rops8g00140 225 Gene3D Transferase(Phosphotransferase) domain 1 1 225 - -
Rops8g00140 225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 61 73 IPR008271 GO:0004672|GO:0006468
Rops8g00140 225 FunFam Wall-associated receptor kinase-like 20 18 224 - -
Rops8g00140 225 Pfam Protein kinase domain 6 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00140 225 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 3 218 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00140 Rops-Chr8 3281742 3282419 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00140 3 218 Receptor kinase-like Gene Family AT1G25390 61.187 6.94e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops8g00140 Pkinase 1.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00140 - - cam:101490779 330.487