Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00137 ATGCAAGCCACTCTCCGAGCAGCGACATTTTGTTCGGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTCTGGTTTTGGCACCAACAAAGGAGCTAGCACAGCAGATTGGGAAGGTTATGCGAGCTCTTGGTGATTACCTTGATGTTAAGATTCACGCTTGTGTTGGTGGGACAAATGTTCGTGAGGATCAGCGCATTCCCCAGGCTGGTGTCCATACTGTTGTTGGCACTCCAGGGCGCGTGTTTGACATGCTGAGGAAACAGTCTCTTCGCCCAGATCACATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGGTTCAAGCAAAGATGGGAGAACAAAGGGTGCCCCAACACCTACACAATGAAACCAGGGAGCATCGTGGGGCTGTTCCTTTTCTCTCATGGGCTGGTTTGGAGCTCCCTGTTTGAGAGTTTCTTGGCCGCCGAGTGGCCTTCAAAAAAGGGGCTTGTGCACCGAGAGCTTCTTGTGCTCTAG 522 0.5057 MQATLRAATFCSGILQQLDYGLVQCQALVLAPTKELAQQIGKVMRALGDYLDVKIHACVGGTNVREDQRIPQAGVHTVVGTPGRVFDMLRKQSLRPDHIRMFVLDEADEMLSRGFKQRWENKGCPNTYTMKPGSIVGLFLFSHGLVWSSLFESFLAAEWPSKKGLVHRELLVL* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00137 173 Gene3D - 12 127 IPR027417 -
Rops8g00137 173 PANTHER RNA HELICASE 8 118 - -
Rops8g00137 173 Pfam DEAD/DEAH box helicase 11 121 IPR011545 GO:0003676|GO:0005524
Rops8g00137 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 120 IPR027417 -
Rops8g00137 173 SMART ultradead3 1 168 IPR014001 -
Rops8g00137 173 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 103 111 IPR000629 -
Rops8g00137 173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 173 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00137 Rops-Chr8 3202444 3203072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00137 3 118 Eukaryotic Initiation Factors Gene Family AT3G13920 81.034 3.55e-63 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00137 K03257 - gmx:100809395 208.764