Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00131 ATGCACCACATTGATTGGTGGTCTTATAATCCCCTAGCTTGGGTCCTTCCACAAGAAGACACGGGTTCCTCAACATACAAAGCTTGCATTTCAGCCATGAAGCTTATAGCTCGTGTTGCTCCTTGCTCCCTCATGGGTCCAAGTTGCGTGAACAAGTCCATGATCGGTGAAAGCTTACAAGATGTCTACGAGATTGGCGGTATTGGTACTGTGCCTGTTGGACGTGTTGAGACCGGTACCTTAAAGCCTGGTATGGTTGGGACTTTCAATCCCACTGGGTTGGCAACTGAAGCTCGGTCCGTGGAGATGCACCACGAGGCTCTCCCAGGCGACAATGTGGGATTCAACGTGAAGAACATTGCAGTCAAGGATCTCGAGCGTGGTTTTGTTGCACCCAACTCAAAGGAGGACGCAAACCACCGGAAACCTTGGAGAAGCGATATTTGA 447 0.5011 MHHIDWWSYNPLAWVLPQEDTGSSTYKACISAMKLIARVAPCSLMGPSCVNKSMIGESLQDVYEIGGIGTVPVGRVETGTLKPGMVGTFNPTGLATEARSVEMHHEALPGDNVGFNVKNIAVKDLERGFVAPNSKEDANHRKPWRSDI* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00131 148 Pfam Elongation factor Tu domain 2 69 130 IPR004161 GO:0005525
Rops8g00131 148 SUPERFAMILY Translation proteins 59 135 IPR009000 -
Rops8g00131 148 FunFam Elongation factor 1-alpha 52 133 - -
Rops8g00131 148 CDD EF1_alpha_II 59 137 - -
Rops8g00131 148 PANTHER ELONGATION FACTOR 1 ALPHA 51 139 - -
Rops8g00131 148 Gene3D Translation factors 57 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00131 Rops-Chr8 3042258 3042991 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00131 59 137 Eukaryotic Initiation Factors Gene Family AT5G60390 79.518 3.57e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00131 K03231 - mus:103969643 139.428