Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00123 ATGAAACCTTTGCTTCACTCATCTTCCATTTTCTTTTTATGGGTCACACTTGTCTTCTTAATCAATGTTCCAACATATCTTTGTCAGGACGATGGCCACTACACCAATTGCAGTAAAACTTTTACCTGCAGAGGAGTTGCAGCCTTTCCTGGTATTCTTTGCTGCATGTACTTTAAATTTGTGGGGAAACGAAGGAGAAAAACCACTGAGCAATCAAGAAGCAAGGACTTCCTCACTCCTACTTCTGGTGAACTCAAAGATGGACGTGTGGTTATAGTGAAACACCTTTATAGAAGCAATTTGGATGATGAAGTTAAACGTGTTGATCGGTTCATGAATGAAGTTAAGATTCTAGCTTGCTTACAACATCAGAACCTGGTGACACTCTTTGGTTGCTCCAATAGACATAGCCGAGAACTTCTCCTTGTTTATGAATTCATGCATAATGGAACCGTGGTTGATCATCTTTATGGAAGTAGATCAAAATCTACTTTACTCCCTTGGCCAGTAAAATTGAACATTGCAATAGAAACAGTTGAGGCACTAGCCTACCTCCACGCAAATTATGTCATACACCGTGACGTAAAATCCAACAACATTATCCTAGATGATGAATTTCACGTAAAGGTTGTCGATTTTGGTCTCTCACAGTTGGTCCCAGATGATGTAACTCATGTGTCAACTGCTCCAAAAGGAACACTTGGTTACATTGACCCTGAGTATTAG 726 0.3994 MKPLLHSSSIFFLWVTLVFLINVPTYLCQDDGHYTNCSKTFTCRGVAAFPGILCCMYFKFVGKRRRKTTEQSRSKDFLTPTSGELKDGRVVIVKHLYRSNLDDEVKRVDRFMNEVKILACLQHQNLVTLFGCSNRHSRELLLVYEFMHNGTVVDHLYGSRSKSTLLPWPVKLNIAIETVEALAYLHANYVIHRDVKSNNIILDDEFHVKVVDFGLSQLVPDDVTHVSTAPKGTLGYIDPEY* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00123 241 Gene3D Phosphorylase Kinase; domain 1 77 147 - -
Rops8g00123 241 ProSiteProfiles Protein kinase domain profile. 55 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00123 241 SMART serkin_6 58 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00123 241 Pfam Protein kinase domain 86 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00123 241 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 77 241 IPR044652 GO:0004672
Rops8g00123 241 SUPERFAMILY Protein kinase-like (PK-like) 84 241 IPR011009 -
Rops8g00123 241 Gene3D Transferase(Phosphotransferase) domain 1 148 241 - -
Rops8g00123 241 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00123 Rops-Chr8 2799991 2806703 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00123 77 241 Receptor kinase-like Gene Family AT1G25390 60.241 7.16e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops8g00123 Pkinase 7.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00123 - - lja:Lj1g3v3289980.3 245.358