Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00095 ATGGCCAATGTTGATTACCATGCAAAATCCACCCCATCTCTAAAGCTCTTTGGTGTCAACATTAACAAATCCCCCAAAGATACTCATCAAGAAGCAGGTATGAGTGAATCTCCATCACCACCATCAGAGTTCAACTCCACTAGAAAATATGAGTGCCAATATTGTTGCAGGGAATTTGCAAATTCACAAGCACTAGGAGGACACCAAAACGCACACAAGAAAGAGAGACAACTCTTGAAACGTGCTCAAATTAAAGCAGCTCGTGCCTTTGTTGCTTCAAATATCCAAAATAGAATCATATTCTCACCACCAACACTGCCACCACCGCCAAATCATCATCATCGTCATCATCATCTCCTCGTGGCACCACCTTCCTTTGTAGCTCCTGAAACACGTGTCTATGCTACAGGCTTTGCTGGATTCAACGGCGGTGATAATGGTGGTGGTGGTCATCTTCGTAGTCAACAAGGGTTTGGTTTGAATTTGCATCTTAGCCTATAA 501 0.4331 MANVDYHAKSTPSLKLFGVNINKSPKDTHQEAGMSESPSPPSEFNSTRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQIKAARAFVASNIQNRIIFSPPTLPPPPNHHHRHHHLLVAPPSFVAPETRVYATGFAGFNGGDNGGGGHLRSQQGFGLNLHLSL* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00095 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Rops8g00095 166 PANTHER ZINC FINGER PROTEIN 5 9 129 IPR044299 GO:0010090
Rops8g00095 166 SUPERFAMILY beta-beta-alpha zinc fingers 47 77 IPR036236 -
Rops8g00095 166 Gene3D Classic Zinc Finger 26 98 - -
Rops8g00095 166 MobiDBLite consensus disorder prediction 18 45 - -
Rops8g00095 166 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00095 Rops-Chr8 2420272 2421093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00095 8 90 C2H2 Transcription Factor Family AT1G67030 63.095 2.19e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00095 - - gmx:100500337 145.591