Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00089 ATGAGTGTGAGGTCCAAAAATTTGAACTGTGTTTTCTATTCAGAAACTTACCATCCCATTCAAGCTGGTAGCATCGATGGCACTGATACTGTTCCTCATGACAACGCCATTTATCGTGCTCAACTCTGTTCCTCTATTGGCCTCTATGACCCATTTGGTGATCCTAAGGTCATTGGAGACCCTTATTGCACTGTCTTCGTGGGTCGTCTCTCTCGCCTCACCACCGAAGATACACTACAAAAGGTTATGAGTAAGTATGGTCGGGTGAAGAATTTGCGGTTGGTCAGGGACATTGTGACAGGAGCTTCACGTGGTTACGCTTTTGTTGAATATGAAACTGAAAGGGAGATGCGACGGGCATATATGGATGCTAATAATTTAATTATTGATGATTCTGAAATCTTAGTTGATTACAACAGACAGCGGTTGATGCCTGGATGGATTCCTAGAAGATTAGGTGGTGGTCTTAGTGGTAAGAAGGAATCAGGACAACTTCGTTTTGGGGGAAGGGATAAACCATTTCGTGCACCCTTGAAACCAATCCCATATGATGATTTGAAGAAGCTTGGTATCCCACCTCCGCCTGAAGGAAGATACATGTCTCGCTTTCAGGTTCCATCCCCCCCTAGAAGAGAAAGGAACCATTCAGACAGGGAAGAAGAGTCTCATAGAAGGGGTTCTAATGATAGGAAAAGGAACCATTCAGACAGGGAAGAAGACTCTCATGGAAAGGATTCTAGAGATAGGAACAGGACAGAAGGTGCCCGCGAAAGTCCAGTGGAGATGGAAGAAAGGCACTACAGAAGGAGTTCAAGTCACCGGGAAGACCACCATCATTCACGTAGAAGGAGCTCTTTGGAGAGGAGTGGTCGTTACCATGAGAGGAGTTCATCTGAGAAAGAACATAGATACAGCAGGAGTTCTACTGAAACTGAGAGACATTCTAGGAAAAGAAAAGAAAGAGATGAACACTCTGGTAGGAGGGAAAAATATAGTCACTATTCCCCTTACAAGGACTAA 1020 0.4441 MSVRSKNLNCVFYSETYHPIQAGSIDGTDTVPHDNAIYRAQLCSSIGLYDPFGDPKVIGDPYCTVFVGRLSRLTTEDTLQKVMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYMDANNLIIDDSEILVDYNRQRLMPGWIPRRLGGGLSGKKESGQLRFGGRDKPFRAPLKPIPYDDLKKLGIPPPPEGRYMSRFQVPSPPRRERNHSDREEESHRRGSNDRKRNHSDREEDSHGKDSRDRNRTEGARESPVEMEERHYRRSSSHREDHHHSRRRSSLERSGRYHERSSSEKEHRYSRSSTETERHSRKRKERDEHSGRREKYSHYSPYKD* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00089 339 MobiDBLite consensus disorder prediction 208 271 - -
Rops8g00089 339 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 12 233 - -
Rops8g00089 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Rops8g00089 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Rops8g00089 339 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 50 171 - -
Rops8g00089 339 SMART rrm1_1 64 137 IPR000504 GO:0003723
Rops8g00089 339 Gene3D - 50 171 IPR012677 -
Rops8g00089 339 SUPERFAMILY RNA-binding domain, RBD 49 170 IPR035979 GO:0003676
Rops8g00089 339 MobiDBLite consensus disorder prediction 150 339 - -
Rops8g00089 339 MobiDBLite consensus disorder prediction 280 339 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00089 65 136 Eukaryotic Initiation Factors Gene Family AT2G36660 36.111 2.19e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00089 K13155 - gmx:100814109 483.026