Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00078 ATGCGGATGAGTTGCAACGGATGCCGGGTGCTAAGAAAAGGTTGCAGTGAGAATTGCAGCATAAGACCCTGTTTGCAATGGATCAAGAGCCCTGAATCTCAAGCTAATGCTACTGTGTTTCTCGCTAAGTTCTATGGTCGTGCTGGACTCATGAACCTTGTCAACGCTGGCCCTGAACATCTTCGTCCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCTGTCGGTCTGTTATGGTCGGGGAGCTGGCAGCTATGTCAAGCCGCCGTGGAAGCCGTCTTGAAAGGCGCACCGATCACTCCGATAACCTCCGAAGCCGCCGCGAGTGGGCGGGGCCCACCATTCAACAAGGCTTACGACATACGCCACGTGTCAAAGGATGAGAACTCCGCTGCGTCGAACGAAACTCAAACTCAAACTCAGCAACGAGTCAAGACTCGGTCACGTGTCAAGCGATCCCTCGCCACCAAGGCGAAACCCACCATCGAGGAAAACAGTGATAAAAGAACCGAACCCGGTTCGGATGAACCGGATGTTGCATGCGACGCTGGTCGTGCCTGGATCGGGTGTTGCGCAACTGAAGAGGTTTTGAACCGGTCTGCCAGTCACGAGTCTTCGCTCAGCCATCAGTCGGAGGCGGCGGAGGGAGAGAGCAAAGAGAGCGAGAGCATGGTTTCGGTGGAGACGGCGGAGACTTCGATTCTCTTCCGTCATGAACCGGAGTCGAATCGGGTACGTGGTGATCGAACCGGTGAGAGTTGTGGTGATCATGTTGGTTTAGAGTTGACGCTTGGGTTCGAACCGGCCTCACGTGAGCACCACGTGGTTCCTGTGAAGAAGAGAAGGATTGAATTTAAGAATTATTGTGGTGGCTCGGCTGAGAATAGCTCGTGCAAGATGGAGCTGGGGCTTGAGTACCAGGCGGCTTGA 960 0.5406 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAASGRGPPFNKAYDIRHVSKDENSAASNETQTQTQQRVKTRSRVKRSLATKAKPTIEENSDKRTEPGSDEPDVACDAGRAWIGCCATEEVLNRSASHESSLSHQSEAAEGESKESESMVSVETAETSILFRHEPESNRVRGDRTGESCGDHVGLELTLGFEPASREHHVVPVKKRRIEFKNYCGGSAENSSCKMELGLEYQAA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00078 319 MobiDBLite consensus disorder prediction 140 154 - -
Rops8g00078 319 PIRSF AS2 1 318 IPR017414 -
Rops8g00078 319 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Rops8g00078 319 MobiDBLite consensus disorder prediction 244 262 - -
Rops8g00078 319 MobiDBLite consensus disorder prediction 137 189 - -
Rops8g00078 319 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 274 - -
Rops8g00078 319 MobiDBLite consensus disorder prediction 166 188 - -
Rops8g00078 319 MobiDBLite consensus disorder prediction 211 262 - -
Rops8g00078 319 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00078 Rops-Chr8 2084857 2086243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00078 1 314 AS2 family AT3G02550 56.467 7.26e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g00078 LOB 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00078 - - lja:Lj1g3v3317390.1 462.225