Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00072 ATGAAGATTAACGTCAAGACACTCAAGGGGTCTCACTTTGAGATCGAAGCGAACCCACAAGACACGGTTGCTGATGTGAAGAAAACAATAGAGGGAGTGCAAGGTGCTGATGTTTACCCAGCTGCTCAACAAATGCTTATTCATCAGGGGAAAGTGCTTAAGGATGCCACGACCCTGGAAGAAAATAAAGTCGCTGAGAATAGTTTTCTTGTGATCATGTTATCCAAGACTAAGGTATCATCAAGTGGAGCCTCAACTGCTTCATCTGCATCATCAAATCTGGCAGCCCAACCTGCAAGTTCTTTGCCTCCCACTTCAACAACACCTCAACCTCCTGCTTCGACTGTCGTACAGGAAGAATCCAATCCTGAGCAAAATCCTGTTATAACTCCTCCCACCATTGCAGTATCCAGCATCTATGGCCAAGCGGAATCAAATCACATTGCAGGAAGTGATTTAGAATCAACTATTCAACAGATTCTTGAAATGGGGGGAGGAAGTTGGGATCGGGATACTGTTATTCGTGCTCTTCGTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTGTATTCTGGCATTCCCGATCAAGCTGATGTCCCAGCAGTTGCCAGATCCCCCACTGTTGGGCAGGCAGAAAACCCTTCAATCCAGGCTCCACAACCAGCTGTGCCTACTGGTGGGCCCAACACCAATCCACTCAACCTGTTTCCCCAAGGCATTCCCGATATGGGTGCAAATGAAAATGCAGGTGACTTGGATTTCTTGCGAAACAATCAGCAGTTCCAAGCCTTGAGAGCAATGGTGCAAGCAAACCCTCAAATTTTGCAGCCCATGCTTCAGGAACTGGGAAAACAAAATCCTCACCTAATGCAGCTTATCCAAGAGCATCAAGCTGACTTCTTACGCCTTATAAATGAACCTGAAGGAGAAGAGAACCTACCGAGTCAGGTGGCTTCTGGGATGCCTCAGACCATCACGGTCACCCCTGAAGAGCATGAGGCCATTCAACGGCTTGAAGATATGGGATTTGATCGAGATCTTGTGTTGGAGGTGTTCTTTGCTTGCAATAAAAACGAGGATCTGGCAGCCAACTATCTACTGGATCACCAAAATGAATTTGATGACTAG 1134 0.4638 MKINVKTLKGSHFEIEANPQDTVADVKKTIEGVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFLVIMLSKTKVSSSGASTASSASSNLAAQPASSLPPTSTTPQPPASTVVQEESNPEQNPVITPPTIAVSSIYGQAESNHIAGSDLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPDQADVPAVARSPTVGQAENPSIQAPQPAVPTGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGEENLPSQVASGMPQTITVTPEEHEAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFDD* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00072 377 SUPERFAMILY UBA-like 309 376 IPR009060 GO:0005515
Rops8g00072 377 Gene3D - 245 310 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops8g00072 377 MobiDBLite consensus disorder prediction 82 103 - -
Rops8g00072 377 SMART CBM 252 295 IPR006636 -
Rops8g00072 377 SMART ubq_7 1 75 IPR000626 GO:0005515
Rops8g00072 377 Pfam UBA/TS-N domain 335 368 IPR015940 -
Rops8g00072 377 Pfam UBA/TS-N domain 154 191 IPR015940 -
Rops8g00072 377 CDD UBA1_Rad23_plant 148 196 - -
Rops8g00072 377 Gene3D - 1 80 - -
Rops8g00072 377 SUPERFAMILY UBA-like 149 203 IPR009060 GO:0005515
Rops8g00072 377 Pfam XPC-binding domain 254 309 IPR015360 GO:0003684|GO:0006289|GO:0043161
Rops8g00072 377 SUPERFAMILY XPC-binding domain 251 313 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops8g00072 377 Gene3D - 148 196 - -
Rops8g00072 377 CDD Ubl_Rad23 1 74 - -
Rops8g00072 377 FunFam UV excision repair protein RAD23 homolog 324 372 - -
Rops8g00072 377 FunFam UV excision repair protein RAD23 1 80 - -
Rops8g00072 377 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 150 194 IPR015940 -
Rops8g00072 377 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Rops8g00072 377 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 331 371 IPR015940 -
Rops8g00072 377 PRINTS DNA repair protein Rad23 signature 344 358 IPR004806 GO:0006289
Rops8g00072 377 PRINTS DNA repair protein Rad23 signature 327 343 IPR004806 GO:0006289
Rops8g00072 377 PRINTS DNA repair protein Rad23 signature 359 374 IPR004806 GO:0006289
Rops8g00072 377 PRINTS DNA repair protein Rad23 signature 280 302 IPR004806 GO:0006289
Rops8g00072 377 MobiDBLite consensus disorder prediction 82 130 - -
Rops8g00072 377 FunFam UV excision repair protein RAD23 B 245 310 - -
Rops8g00072 377 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 366 - -
Rops8g00072 377 SMART uba_6 333 370 IPR015940 -
Rops8g00072 377 SMART uba_6 153 193 IPR015940 -
Rops8g00072 377 NCBIfam UV excision repair protein Rad23 1 375 IPR004806 GO:0006289
Rops8g00072 377 FunFam UV excision repair protein RAD23 homolog 146 196 - -
Rops8g00072 377 Gene3D - 324 373 - -
Rops8g00072 377 MobiDBLite consensus disorder prediction 111 130 - -
Rops8g00072 377 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Rops8g00072 377 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00072 Rops-Chr8 1885885 1896935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00072 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 9.93e-06 43.1