Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00030 ATGCCGGAGCTTCGTAGTGGACCGCGACGTCGTCGTGCTCCGGTAGGCCGTCGAACCTCAAAACCACCGTCTCCGGTGGGCAAATACGTGAAGACTCGGGCTGCAGTTGCGGCGGCCAAGAAACTTGAGGAGGAAAAGCCAGTGATCGTGATATCAGAGAGGGATAGCGACATAAAAAAGGACAAGGAAGAAATTGAAGGCTTGATGGGTGATGATAGTGGCGGTTTGAGTGCCAACAAGGCCATTCCTCAAGAGGATGAGGGCAATACTGCCCCTTTTCCTGAGAGGGTTCAAGTAGGAGGATCACCTGTGTACAAAGTGGAGAGGAAACTTGGTAAAGGTGGGTTTGGACAGGTTTTTGTTGGCCGTCGAGTTACCGGTGGTAATGATCGTATTGCTGGCCCTGGTGCCACTGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATACCTAAAGCACATTATAAAGGAAGACAAGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAAGCCAGGCGATGTCCGCAGAGATGGTTGCATGTATTGCCGTTGAGTCATTGTCGATCCTGGAGAAGATGCACTCGAGAGGATATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCTGGTACACCACAAGAGAAAAAATTGTTTCTTGTTGACCTTGGATTAGCAACAAAGTGGAGAGACAACTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGGGGACTGTTCGATATGCCAGTGTTCATGCCCATTTGGGAAGAACAGCCAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATTTTCCTTCACAAAGGCCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGCTTCTGCCCTCCTCCTTTCAGGCAGTTTCTTGAGATAGTAGTCAACATGAAATTTGATGAAGAACCTAACTATTCGAAGCTAATATCTCTGTTTGATGGTATGCTTGGACCAAATCCTGCACTGCGGCCAATTAACACTGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGGGTAGACTGAATGTTGAGGAAGAGGATGATTCGCAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCGCAGCATGTGGATAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCTAATCTCTGGGCACTTATCATGGATGCTGGAACTGGTTTTACAACTCAAGTTTACAAGTTGTCACCTTTTTTCTTACACAAGGATTGGATCATGGAGCAGTGGGAGAAGAACTATTACATTACTTCCATTGCTGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACGCAGTATACGCAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTGACTTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTGATCAGGTCGTTGAACTTGATTTTCTCTATCCTAGTGAGGGCATCCACAGACGTTGGGATAGTGGTTACAGAATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTGATATTAAGCATTCCGAGGCGCAGGCCTGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTATATCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGA 2004 0.4546 MPELRSGPRRRRAPVGRRTSKPPSPVGKYVKTRAAVAAAKKLEEEKPVIVISERDSDIKKDKEEIEGLMGDDSGGLSANKAIPQEDEGNTAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRIAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKAHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTPQEKKLFLVDLGLATKWRDNSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNVEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVDRGIADGLLISCVASCSNLWALIMDAGTGFTTQVYKLSPFFLHKDWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDSGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00030 667 Pfam Protein kinase domain 105 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00030 667 FunFam casein kinase 1-like protein HD16 78 423 - -
Rops8g00030 667 ProSitePatterns Protein kinases ATP-binding region signature. 111 143 IPR017441 GO:0005524
Rops8g00030 667 PANTHER CASEIN KINASE-RELATED 105 630 - -
Rops8g00030 667 SUPERFAMILY Protein kinase-like (PK-like) 105 388 IPR011009 -
Rops8g00030 667 ProSiteProfiles Protein kinase domain profile. 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00030 667 SMART serkin_6 105 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00030 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Rops8g00030 667 CDD STKc_CK1 105 380 - -
Rops8g00030 667 MobiDBLite consensus disorder prediction 1 30 - -
Rops8g00030 667 Gene3D Transferase(Phosphotransferase) domain 1 81 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00030 Rops-Chr8 646991 655781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00030 92 262 EF-hand Containing Proteins AT4G36070 26.816 8.10e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Rops8g00030 Pkinase 4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00030 - - gmx:100819969 1227.62