Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00028 ATGAAAGAGGCAGCTCCCATGTCTCATTCGTATCCTGCACCTATAGTAAAGTATGAGGAGGTTGTAGCAAATCCCAAGCTCTTCATGTTTGCCTTGGAGAAGCTCCATGCTTCTATGGGTACCAAGTTCATGATTCCCGTTATTGGAGGAAAAGAACTAGATTTGTGTCGCCTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATTAGAGAGAGAAGATGGAAGGAAGTAACTGCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCCTTTGTGCTGAGGAAGTACTATTCTTCATTGCTTTACCACTTTGAACAAATCTACTATTTTAAAGCCAATCGGTGGACCCCTGAAACTTCTGATGCTTTGCAGGGTCAGTCAACCACGCCAGTTCCCGCTCAAAGAACACAATTTTCACAGCCTTCTCCAGGAATTCAATCAGCTGTCTTTCAACAGTCAAGGGTTAATGCTGCTGAATTGCCTCAAGGATCCTCAGTGATTGGAGTGATTGATGGAAAATTTGAAAGTGGGTATCTAGTTTCAATTTCAGTAGGTTCAGAGATCCTCAAAGGTGTACTTTATGAGGCTCCACAAATCCCTTTATTGCCTGCATCTCACCATCAAAGCATTATGGCTAAGAACAACAATGGCTCTGCTGCATTGGGTGTCCATCGTCGCCGTCGCAGGAAGAAATCAGAAATCAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAGCAACAACACCAAGCCAAGGACAGGGATATTAGTAGGATGATTGGTGAACTGTGGAACAAGTTAAAAGAGCCTGAAAAATCAGTTTATCAAGAGAAGGCTATTAAGGATAAAAAGAGGTACGAAGCAGAAATGGAGGATTATCGTGAGAAATTGAAGATGTGCAATGTTATAAGTGATGCTGTGCCACTACAACAAAGGCTACCTGAGGCAGATACAGGTTTGGTGGATGTGGACGTCAAATTGCTTGGTTCTCCTCAGACTCCTGAGGAAAGCAGTTCTGGTGGAAGTGACTATGAAGATTGTATCAATATGGACGCTTCTCCTCCTGGACCTGGACCTGGACATGAAGTGCAAGTGGCTTCAGACGAGCTTCTTCGCCATTGCCAGAGTGAAGGGGATGCTGGAGTTCAACAACCACAGGTTCAAAAGATGAATGAGAGCCAAAATTTGCTAGCACTACTTTAG 1260 0.4357 MKEAAPMSHSYPAPIVKYEEVVANPKLFMFALEKLHASMGTKFMIPVIGGKELDLCRLFIEVTSRGGIEKLIRERRWKEVTAVFNFPSTATNASFVLRKYYSSLLYHFEQIYYFKANRWTPETSDALQGQSTTPVPAQRTQFSQPSPGIQSAVFQQSRVNAAELPQGSSVIGVIDGKFESGYLVSISVGSEILKGVLYEAPQIPLLPASHHQSIMAKNNNGSAALGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKQQHQAKDRDISRMIGELWNKLKEPEKSVYQEKAIKDKKRYEAEMEDYREKLKMCNVISDAVPLQQRLPEADTGLVDVDVKLLGSPQTPEESSSGGSDYEDCINMDASPPGPGPGHEVQVASDELLRHCQSEGDAGVQQPQVQKMNESQNLLALL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00028 419 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 313 IPR009071 -
Rops8g00028 419 SMART hmgende2 245 314 IPR009071 -
Rops8g00028 419 MobiDBLite consensus disorder prediction 226 240 - -
Rops8g00028 419 Gene3D - 17 129 IPR036431 GO:0003677
Rops8g00028 419 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 346 - -
Rops8g00028 419 MobiDBLite consensus disorder prediction 348 419 - -
Rops8g00028 419 MobiDBLite consensus disorder prediction 221 252 - -
Rops8g00028 419 Pfam HMG (high mobility group) box 246 313 IPR009071 -
Rops8g00028 419 Gene3D High mobility group box domain 229 322 IPR036910 -
Rops8g00028 419 CDD ARID_HMGB9-like 24 109 IPR045303 GO:0003677
Rops8g00028 419 SUPERFAMILY ARID-like 20 119 IPR036431 GO:0003677
Rops8g00028 419 FunFam High mobility group B protein 15 16 129 - -
Rops8g00028 419 PRINTS High mobility group (HMG1/HMG2) protein signature 297 317 - -
Rops8g00028 419 PRINTS High mobility group (HMG1/HMG2) protein signature 278 297 - -
Rops8g00028 419 SUPERFAMILY HMG-box 234 317 IPR036910 -
Rops8g00028 419 SMART bright_3 23 114 IPR001606 GO:0003677
Rops8g00028 419 Coils Coil 295 322 - -
Rops8g00028 419 SMART ARID_2 19 109 - -
Rops8g00028 419 CDD HMG-box_AtHMGB9-like 246 312 - -
Rops8g00028 419 ProSiteProfiles ARID domain profile. 22 113 IPR001606 GO:0003677
Rops8g00028 419 MobiDBLite consensus disorder prediction 398 419 - -
Rops8g00028 419 Pfam ARID/BRIGHT DNA binding domain 26 109 IPR001606 GO:0003677
Rops8g00028 419 FunFam High mobility group B protein 15 228 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00028 Rops-Chr8 634100 638000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00028 4 346 ARID Transcription Factor Family AT1G04880 57.143 1.54e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops8g00028 ARID 4.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00028 - - gmx:100783284 535.798