Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00023 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGAAGCAGAAGAGTGGCAAGGTCTAGATCTTCCTTCCACCATGGTACTTTGAGTGAGCCACTTCACTCTTTGGAAGAAAGGCTTTGTGTATCAAGTGAAAGAATTAAAACACAGAAAACAAAGTCTGATGCCTCACGATATCGGATAAGAAATGGACTGTTAAAAAGTGATACTCATACTGCTAAGAACCGGAGGCCAAGAGATAATGTTTTTACAGGAGACAAACTGGATGAACGGTTGAGGAATGAAACTGAGAAGAAATCTTCTAGCGGTACAAATTCAGGCAAAGGAATTGATAACAATTTATCAGAATACATGCCAAGGTATGAGGTGAGAGAGCAAGAAGATGAAGACAGCAGGGTGGAAGATGTTTATTCAGGCAAAGTGTCTAATGCTAAAAGAGGCAAAGAAAAGTATTTCAATGAACTTGTGGAAAAGGAAAAATGGGGAGAAAATCCAGTCAAGGATGCAAAGGCGGGTAAGATGCATAGCAGAAGTTCCAGTATGCATATGCTTAAACACTCCAGTGGAAATGGAAGGAATATGAAACCCCAGGAGGACTCATACAACAGTTCTAACAGCAAAAGCTTAGAAGATAGCAGGAATAAAAATAGCCAGCATGCCATGCAAGCAGCTTCTAGTCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATGTAAAACGTTTTCTAAAGGATGAGGATTTTCGGTCTACTTTGCGTCACAATTGTTTCTCCTCATTGAATTTTATTCAACTGGATGAAGAGAACAAAACAGAGACCAAAATCATTTCAAGTCTTGAGCAAGCAATTGAGACCATAGAACAAACTGCTGAGGAACTTATATCTGCCACATATCTGAAAAGAGCCACGATGCAGCTTAGCATTATCACAGGTTTGAGTTTGAATGATCTCAAGTATGGGTGTACATGTGGGATCCCGAACTATAAGTTTTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATATGATACAGAGAAAAAATAAAGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGGACGATATTGTTACCTGAACTGTGGGAGCATCTATTTTCTCCACAATTTTCCCATTTGAAGGCATGGTACAACAAGGAAGCTGGAATACTAGTAGATACACGAGGCAAAACAAGAAAGCTAAAGCTTCTTCACAAAGTGTATAATGAACATTTGGATTCAGGAACTCATATATTTGCTTTATATTACAAAGATTGGCTAACTGAAGGAGGAGAATCTCCACCTATTCCTTCTATTGGCATTCCATCAATATCTTTTAATGGAAGTCAACAGGGAAGTTCACTTGGTCTTTCTTCAGAGTCTGCTAGCTCCACTGATCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTATATGATTCTGTCTTTGGTAGCTCTGGTAAATCTGGAGTCTACGAAGTGGAAGATAATAAGGATGAAGATAGCCTAGAAAATTTCGTGAGAGGCTCTTATGGTTCAACTATTGTTAAACAAACATTAATATATGAGTCTGAAACTGTTAAATTTAGAGATCAAGATACTGAAGATTTCACTCCAAGTGTACCAGTTGATGCATTCCATCCTCGGAAAGGAACTTCAATATCAGCTGAAGAAGAATGGCAAGAAAGGAATCTCAGTAATGACACGAATAACTCTTTCTCCATACAAACTAATTTAAATAGTCGCATAGTTGATGCTCAACCACATGAAAAAGCAAATGAACTTGCTTTCAGAAAGCCAAATAATATAAGCTCTACTCTTGAAGGATCATATTTTCCAAGCATTCCACAGGAGTTTATTTGTCCTCTTACTGGAAATCTATTTGAGGAACCAGTCACCTTAGAGACTGGTCAAACCTTTGAAAGAGAAGCAATCAAATCATGGTTCGAAAACGGAAACAAAACATGCCCAGTAACAGGAAATACTTTAGAATGTGTAGCCATGCCATTTACCAACCTTATTCTGAAGCGTTTGATTGATAATTGGAAGTCAGAACGCTTTAATCACCTTCTGGATTTTGCTTCTCAAACAGTGGAAAATTCAAAGGAACTTAAGTCGAAAACGATGGATGAGGCTGTGGTTTTCAAGTTAGAGGGTCTTCTCTCCTCTTTGAAAGAAGAGGAAAAATCAACTTATTCTAAGCATCTCATCTCTTTAGGAGTTCTTTCATTTCTTTGTAGGAGGTTTGAACTAGGAAATATGGAAGAAAAATCACACGTGGTGGTACTCTTGCTAAATTTTATTCATGCATACTCTGATTGCATATATCAAATAGCAAGGAGTATTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGTAAGGAGGTTACCCCAATAACAAATGCAATACTATTCCTTACTGAAATTTTATCCATCAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAGATGTATTGAATACAATGCATATTCTGCTCATGCATCTCGAGAATTCTTCTCCACTTGAAAAGCCTCTAATTGCTGTCCTTTTGTTACACTTTGATCTATTGGTTCAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCTGTGAATGCCATTGCAGTGGCACTTGATGCCAGTTTAAATGATGAAAAGTCCCGAGAAAAGTGTTGCAGAGCACTTTTAATCTTGTGTGGCCATTTTTCTTCTATCGGAAAGATATCGACGAAGACTAGCATCTTAAAACTAGCAGGTTTTAATAATGATAGGTCAGAATTGAAACCTCCTAGACATGAAGAAGAGGGTCAACCGTCAGATGTAACCATTTTATTGGAAGATGAAGAAGAAGGCGGTGAAGAGTTCCTGATGAACTTGTTAGAATCGTTGATTGGTGATGGAGAAAGTCCCTTTTTGAAGACCATATCTAGATGTTTAGATTCTAGACACCTAGATTTGGTGAGGGCATGTCTAATAACTGTTACATGGTTGAGCTCCTCACTTTCTATGCTATTTAATGTTGGATTGCATCTTCCTGCCTTCTTAGCCATCATCTCTCAATTGAAAGGAATTTTGGAAAATGGAGAACTTGAGCTCAAGATTCTTGCATCTACGTCCTTGCTCAATTTCAGTAAAATATCAGTAGAGTGCAGAATGCTTTTGAAGACTATGGCAGAAGATATTGCTCCCCTTCTTCATGGACTTGTAGATGTAACATGGACTGCAAAGCAGCTGCATGCCATTGTGTCTAGGGGGAATCTGTAA 3324 0.3869 MASSLEELLAEEGFKGSRRVARSRSSFHHGTLSEPLHSLEERLCVSSERIKTQKTKSDASRYRIRNGLLKSDTHTAKNRRPRDNVFTGDKLDERLRNETEKKSSSGTNSGKGIDNNLSEYMPRYEVREQEDEDSRVEDVYSGKVSNAKRGKEKYFNELVEKEKWGENPVKDAKAGKMHSRSSSMHMLKHSSGNGRNMKPQEDSYNSSNSKSLEDSRNKNSQHAMQAASSLALDEVAVQAVVSILNGYVKRFLKDEDFRSTLRHNCFSSLNFIQLDEENKTETKIISSLEQAIETIEQTAEELISATYLKRATMQLSIITGLSLNDLKYGCTCGIPNYKFSACAHLYLSVVYMIQRKNKVSAKHLLQVFCDSPFQARTILLPELWEHLFSPQFSHLKAWYNKEAGILVDTRGKTRKLKLLHKVYNEHLDSGTHIFALYYKDWLTEGGESPPIPSIGIPSISFNGSQQGSSLGLSSESASSTDPFSPQPMVSKKLYDSVFGSSGKSGVYEVEDNKDEDSLENFVRGSYGSTIVKQTLIYESETVKFRDQDTEDFTPSVPVDAFHPRKGTSISAEEEWQERNLSNDTNNSFSIQTNLNSRIVDAQPHEKANELAFRKPNNISSTLEGSYFPSIPQEFICPLTGNLFEEPVTLETGQTFEREAIKSWFENGNKTCPVTGNTLECVAMPFTNLILKRLIDNWKSERFNHLLDFASQTVENSKELKSKTMDEAVVFKLEGLLSSLKEEEKSTYSKHLISLGVLSFLCRRFELGNMEEKSHVVVLLLNFIHAYSDCIYQIARSINRKCLLELLHSKEVTPITNAILFLTEILSIKRRKDVTSFISGLAGEDVLNTMHILLMHLENSSPLEKPLIAVLLLHFDLLVQPQKFSIYREVAVNAIAVALDASLNDEKSREKCCRALLILCGHFSSIGKISTKTSILKLAGFNNDRSELKPPRHEEEGQPSDVTILLEDEEEGGEEFLMNLLESLIGDGESPFLKTISRCLDSRHLDLVRACLITVTWLSSSLSMLFNVGLHLPAFLAIISQLKGILENGELELKILASTSLLNFSKISVECRMLLKTMAEDIAPLLHGLVDVTWTAKQLHAIVSRGNL* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00023 1107 CDD RING-Ubox_PUB 631 679 IPR045210 -
Rops8g00023 1107 PANTHER OS04G0584500 PROTEIN 617 1104 - -
Rops8g00023 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 704 IPR013083 -
Rops8g00023 1107 MobiDBLite consensus disorder prediction 184 222 - -
Rops8g00023 1107 MobiDBLite consensus disorder prediction 166 222 - -
Rops8g00023 1107 MobiDBLite consensus disorder prediction 41 101 - -
Rops8g00023 1107 MobiDBLite consensus disorder prediction 1 120 - -
Rops8g00023 1107 MobiDBLite consensus disorder prediction 465 486 - -
Rops8g00023 1107 ProSiteProfiles U-box domain profile. 629 704 IPR003613 GO:0004842|GO:0016567
Rops8g00023 1107 SUPERFAMILY RING/U-box 624 703 - -
Rops8g00023 1107 Pfam U-box domain 630 701 IPR003613 GO:0004842|GO:0016567
Rops8g00023 1107 SUPERFAMILY ARM repeat 687 1066 IPR016024 -
Rops8g00023 1107 Coils Coil 285 305 - -
Rops8g00023 1107 SMART Ubox_2 633 697 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00023 Rops-Chr8 572156 580722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00023 629 942 U-box Gene Family AT5G37490 26.629 3.20e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00023 - - gmx:100820501 1557.73