Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00020 ATGAGAGCTATATTAAAGCAGAGCCTTTTACTACTCAATTGGAGGAGGATCATCACTAATAATAGCCCAGCATCTTTTATCATGTCAGAATCAGATCATTCCCTTGTTTTCAACACACCCAGGTTGGTTCTCAAGAAGGTTTTGGCCAGATCTCAACAAGAAGGGGATGGAGCAGTTGTTAGAAGAGGCATTGGAAGAAGCGAGTTGAAGAGCTTGGATCCCTTTCTAATGTTGGATCACTTCTCAGTGTCTCCGCCTGGAGGATTTCCTGATCATCCACACAGAGGTTTTGAGACTGTCACCTACATGCTAGAGGGAGCCATAACTCACCAAGATTTTGCTGGGCACAAGGGTACAATAAGAGCCGGTGATGTTCAGTGGATGACCGCGGGCAGGGGAATTATTCACTCCGAAATGCCTGCTGAAGCAAACAACGAGGGATTGCAACTATGGATCAATTTATCAGCCAATGACAAAATGATTGAGCCTAATTACCAAGAACTTCCAAGTGAGGACATACCCAAAGCAGAAAAAGATGGGGTTGAAGCGAGAGTTATAGCAGGGGAAGCAATGGGAGTCCATTCTCCTGTGTACACCAGAACTCCATCCATGTTCCTTGATTTCACCATGATGCCCGAAACTCAGATGCATCAGAGTATTCCGGAGTCATGGAATTCGTTTGTTTATGTAATTGAGGGGGAAGGAGTTTTTGGCTCTCCAAGTTCATCTCCAACTATGCCACACCATGTCCTCGTTTTGAGTCTTGGTGATGGCCTTAGCGTCTGGAATAACTCTTCAAAGCCTTTGAGGTTTGTGCTCATTGGAGGACAGCCACTGAATGAGCCAGTGGCTCAGTATGGGCCTTTTGTGATGAATACACAGTCTGAAATTGAGAAAACTATTGAGGACTATCACTATTGCAACAATGGGTTTGAGATGAGGAAGTATTGGAGATCTCAATAG 963 0.4465 MRAILKQSLLLLNWRRIITNNSPASFIMSESDHSLVFNTPRLVLKKVLARSQQEGDGAVVRRGIGRSELKSLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGAITHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNEGLQLWINLSANDKMIEPNYQELPSEDIPKAEKDGVEARVIAGEAMGVHSPVYTRTPSMFLDFTMMPETQMHQSIPESWNSFVYVIEGEGVFGSPSSSPTMPHHVLVLSLGDGLSVWNNSSKPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYHYCNNGFEMRKYWRSQ* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00020 320 CDD cupin_pirin_C 202 278 - -
Rops8g00020 320 Gene3D Jelly Rolls 174 279 IPR014710 -
Rops8g00020 320 PIRSF Pirin 39 318 IPR012093 -
Rops8g00020 320 Pfam Pirin C-terminal cupin domain 205 309 IPR008778 -
Rops8g00020 320 Gene3D Jelly Rolls 54 305 IPR014710 -
Rops8g00020 320 Pfam Pirin 61 152 IPR003829 -
Rops8g00020 320 FunFam pirin 54 184 - -
Rops8g00020 320 PANTHER PIRIN-RELATED 28 320 IPR012093 -
Rops8g00020 320 CDD cupin_pirin_N 58 154 - -
Rops8g00020 320 SUPERFAMILY RmlC-like cupins 41 318 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00020 Rops-Chr8 535148 537033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00020 38 315 Calmodulin-binding Proteins AT3G59220 63.214 7.79e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00020 K06911 - gmx:100775597 531.176