Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00016 ATGGATGGCATAAACAGGAAGGGAAAAGGGAAGAAGAAAGGTGTCAATGTCATCACCAAAACATGGGAACGATGCAAGTCCATAGGAAGAGGGCGCAAGAGTTCATGTTCATCATCTTCCCTCACTCTAACCACAAGGAGCAAATCGTGGCCAAGCCTTGACCCAGAAAAGCGAGCAAAGAAAAGCAGTGTTGCCCCTGAAGGTTGCTTCTCGGTCTATGTTGGACCCCAAATGCAAAGGTTCGTCATCAAAACTGAGTATGCCAACCACCCCTTGTTCAAGATGTTGCTTGAAGAGGCAGAGTCAGAATATGGTTATAGCAGCCAAGGCCCTTTAGCCCTTCCCTGTGACGTTGATGTCTTTTACAAGGTGTTGATGGAAATGGATGAAGATGTTACTCAAGATACTCCTCAACGTTGCGTTTTTGGGAAACCTTCCCGCTCTCGCTCTTCTTATCAGCTTCTTAGCCCTTCCAGAATGCTTGCCATCAACCACTTCTGA 501 0.4671 MDGINRKGKGKKKGVNVITKTWERCKSIGRGRKSSCSSSSLTLTTRSKSWPSLDPEKRAKKSSVAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYSSQGPLALPCDVDVFYKVLMEMDEDVTQDTPQRCVFGKPSRSRSSYQLLSPSRMLAINHF* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00016 166 Pfam Auxin responsive protein 26 125 IPR003676 GO:0009733
Rops8g00016 166 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 51 125 IPR003676 GO:0009733
Rops8g00016 166 MobiDBLite consensus disorder prediction 31 50 - -
Rops8g00016 166 MobiDBLite consensus disorder prediction 29 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00016 Rops-Chr8 485277 485777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00016 65 149 Calmodulin-binding Proteins AT5G20810 42.353 1.35e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00016 K14488 - gmx:100777217 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00016 8 485277 485777 Rops8g00016 8 485277 485777 ECH