Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00012 ATGACTTCTTCTACTCATGTTCCGACGGATAATGAAGCCGATGGACAGCAGCAGTCAGAATCACAGATGCAGCCTTTATCTGCAGATGGAGTTTCTCATGTAGGTATCGATACTCATAATGTTCAGTGTGCAGCACCTCCACAGCTTGGAACTGAGCATGCCATGGCACCACCTGCTTACCCATATCCGGATCCATACTACAGAAGCATCTTTACTCCTTATGATGCACAACCTGATCCCCCACATCCTTGGTGCTTATTCATCGCTGGCTCTTATGATCATCACACTAATGTTTGGGGCACTAACACCGCCCAGGTGGTGGTGAATTTTAAAATGCATGGGAATGTTTATAGGACTGCCATGTCCACTTTGTCAACTTCTCACATGCTTATAGCTGCTGGAACTGAGGAGGTCCAAGTTCGCCTCTGTGATATTGCTTGCAGGGCATTTGCTCACACTTTGTCTGGTCACCGGGATGGAGTAAATGGCTGTTGA 495 0.4707 MTSSTHVPTDNEADGQQQSESQMQPLSADGVSHVGIDTHNVQCAAPPQLGTEHAMAPPAYPYPDPYYRSIFTPYDAQPDPPHPWCLFIAGSYDHHTNVWGTNTAQVVVNFKMHGNVYRTAMSTLSTSHMLIAAGTEEVQVRLCDIACRAFAHTLSGHRDGVNGC* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00012 164 Gene3D - 74 164 IPR015943 GO:0005515
Rops8g00012 164 SUPERFAMILY WD40 repeat-like 86 163 IPR036322 GO:0005515
Rops8g00012 164 MobiDBLite consensus disorder prediction 1 28 - -
Rops8g00012 164 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 85 162 IPR042238 GO:0006283
Rops8g00012 164 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00012 Rops-Chr8 379054 379697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00012 1 85 CCAAT-HAP2 Transcription Factor Family AT1G30500 41.379 6.79e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00012 K10570 - csin:114305719 135.191