Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00011 ATGGAGAAGGTGAATTTTGTGAAGAATGGGGAGCTGAGATTGCCTCCTGGATTCCGTTTCCACCCGACTGATGAGGAACTGGTTGTGCAATACTTGAAGCGCAAGGTCTTCTCCTGCCCTTTGCCTGCCTCTATCATTCCTGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGGTACTTCTTCAGCACTAAAGAGGCCAAATATCCTAATGGAAACCGATCCAACAGAGCCACCAACTCAGGTTACTGGAAGGCCACTGGGTTGGACAAACAAATTTTAACTTCAAAAGGGAACCAAGTTGCCGGGATGAAGAAAACCCTGGTTTTCTACAGAGGCAAGCCACCTCATGGATCAAGAACTGATTGGATCATGCACGAGTATCGCCTCCTTAGCACCCACACAGTAGCACCTTCCTCTCAATCTCAGAAGCAGAGCCGTGTGGTTCCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAGGTGGTTCTAAAATCGGGGAGGACATATTAGACACTTTCAGACCCAACCTTGATAACGTGAAGAACTCAAGGGTGGTTTTCTATGACTTCTTAGCACAGAACAAGACTGATTTAAACCGTGTCCCTGCTTCCTCTTCCTCGGGCACCAGTGGCATCACTGAGGTTTCCACCAATGAATCGGATGAACATGAGGAGAGCAGTAGCTCCAACACCTTCCCTTATTTTAGAAGAAAACATTAA 756 0.4669 MEKVNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQILTSKGNQVAGMKKTLVFYRGKPPHGSRTDWIMHEYRLLSTHTVAPSSQSQKQSRVVPMENWVLCRIFLKRRGGSKIGEDILDTFRPNLDNVKNSRVVFYDFLAQNKTDLNRVPASSSSGTSGITEVSTNESDEHEESSSSNTFPYFRRKH* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00011 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Rops8g00011 251 MobiDBLite consensus disorder prediction 211 251 - -
Rops8g00011 251 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Rops8g00011 251 MobiDBLite consensus disorder prediction 211 228 - -
Rops8g00011 251 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Rops8g00011 251 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Rops8g00011 251 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00011 Rops-Chr8 352513 354262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00011 1 244 NAC Transcription Factor Family AT5G13180 58.333 1.16e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g00011 NAM 7.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00011 - - zju:107435239 387.111